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[179406_at]

Description F54D1.1 /REP_DB=WormBase Gene ID /WP=CE05936 /TR=Q20763 /GB=CAB00859.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 59.1
(-1.7)
A 		80.2
(-0.2)
A 		41.4
(-3)
A 		124.7
(3)
A 		83
B 113.1
(3)
A 		112.8
(3)
A 		81.7
(-1.7)
A 		72.9
(-3)
A 		40
C 89.9
(-1.3)
A 		140
(3)
A 		70.5
(-3)
A 		82
(-2)
A 		70
avr 87.4
(-0) 		111
(3) 		64.5
(-3) 		93.2
(0.7) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 45.8
(-3)
A 		83.9
(-1.7)
A 		100.2
(-1.2)
A 		88.8
(-1.6)
A 		145.4
(0.3)
P 		225.8
(3)
P 		180
B 117.1
(-0.2)
P 		57.9
(-2.8)
A 		105
(-0.7)
M 		52.8
(-3)
A 		171.9
(2.2)
P 		190.6
(3)
P 		138
C 79.3
(-3)
M 		81.7
(-2.9)
A 		91.2
(-2.3)
A 		118
(-0.8)
M 		114.5
(-1)
P 		185.7
(3)
P 		106
avr 80.7
(-2.7) 		74.5
(-3) 		98.8
(-1.8) 		86.5
(-2.4) 		143.9
(0.3) 		200.7
(3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.5
(3)
A 		17.4
(0.7)
A 		10.8
(-3)
A 		18.3
(1.2)
A 		11
B 36.1
(3)
A 		27.9
(0.6)
A 		18.9
(-2)
A 		15.5
(-3)
A 		21
C 29.8
(0.6)
A 		40.2
(3)
A 		24.6
(-0.5)
A 		13.8
(-3)
A 		26
avr 29.1
(3) 		28.5
(2.7) 		18.1
(-2) 		15.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 8.4
(-3)
A 		29.9
(-0.2)
A 		21.8
(-1.3)
A 		22.5
(-1.2)
A 		43.9
(1.6)
P 		55
(3)
P 		47
B 40.8
(-0.2)
P 		19.3
(-2.4)
A 		25.5
(-1.8)
M 		14
(-3)
A 		69.8
(2.9)
P 		71.1
(3)
P 		57
C 29.4
(-2)
M 		24.9
(-2.7)
A 		23.2
(-3)
A 		23.7
(-2.9)
M 		37
(-0.9)
P 		62.2
(3)
P 		39
avr 26.2
(-2.1) 		24.7
(-2.4) 		23.5
(-2.5) 		20.1
(-3) 		50.2
(1.2) 		62.8
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8522
Sequence Type Exemplar sequence
Representative Public ID F54D1.1 NCBI
Target Description F54D1.1 /REP_DB=WormBase Gene ID /WP=CE05936 /TR=Q20763 /GB=CAB00859.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069713(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069713 NCBI Caenorhabditis elegans F54D1.1 (F54D1.1) mRNA, complete cds. 11/11 None
SNAP00000005949 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11261868:11262980:1 11/11 None
GENEFINDER00000005962 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11261868:11262980:1 11/11 None
F54D1.1 ENSEMBL cdna:known chromosome:CEL140:IV:11261868:11262980:1 gene:F54D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11261873-11262986(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D1.1
Entrez Gene 186227 Entrez gene
SwissProt Q20763 EMBL-EBI
WormBase CE05936 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00859 Hypothetical protein F54D1.1 [Caenorhabditis elegans] ref|NP_502114.1| F54D1.1 [Caenorhabditis elegans] 1.0E-161
blast CAE62031 Hypothetical protein CBG06045 [Caenorhabditis briggsae] 3.0E-72
blast XP_470091 expressed protein [Oryza sativa (japonica cultivar-group)] gb|AAR01750.1| expressed protein [Oryza sativa (japonica cultivar-group)] 8.0E-16
Sequence
Target Sequence 
>C. ELEGANS:179406_AT
attccgcaaattctggctactctgcatctccattcccatctcgtccatctcttccaaacc
atgcgttgtccacatcgttttatcataattcattcatgacaccaattagaaatggaagaa
tgcgatctccggatcaagatcttggagattggtctcgtgagaaaattaatgatactcagc
atgtgcttcagacaaaagtttatattccggagccaccggtttccattgacgggaagaaag
taaaatgcaactacattggtcgcattcttggtccatcaggaatgtctgcaagaatgattg
aaaatcaatatgatgttactcttcttattcgtggagccggatctgtcagaaacaaggcaa
tggatgaaagagtgaggaagagaaatgaacacttggaggagccccttcacgttcttctta
ttgcaagacacaatgacaagacaaaatgtgaggagattctcaacaaggctgcagaaaaaa
ttgaaagtcttttgactccaattcatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCGCAAATTCTGGCTACTCTGC 628 7 221 Antisense
ATGCGTTGTCCACATCGTTTTATCA 17 43 281 Antisense
GATACTCAGCATGTGCTTCAGACAA 645 423 391 Antisense
ATATTCCGGAGCCACCGGTTTCCAT 349 1 422 Antisense
GCCACCGGTTTCCATTGACGGGAAG 511 269 432 Antisense
GCAACTACATTGGTCGCATTCTTGG 331 319 467 Antisense
GTCGCATTCTTGGTCCATCAGGAAT 366 475 479 Antisense
TGATGTTACTCTTCTTATTCGTGGA 387 567 531 Antisense
TCGTGGAGCCGGATCTGTCAGAAAC 200 603 549 Antisense
CCTTCACGTTCTTCTTATTGCAAGA 548 269 624 Antisense
AAGTCTTTTGACTCCAATTCATGAT 672 157 705 Antisense
Sequence Source Affymetrix Proprietary Database