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[179405_at]

Description F23A7.1 /REP_DB=WormBase Gene ID /WP=CE09576 /TR=Q93553 /GB=CAB02975.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 41      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 4.8
(-3)
A 		8.3
(0.6)
A 		10.7
(3)
A 		10
(2.3)
A 		6
B 6.6
(-2.3)
A 		7.7
(0.1)
A 		9
(3)
A 		6.3
(-3)
A 		3
C 6.8
(-0.6)
A 		10
(3)
A 		4.6
(-3)
A 		5.7
(-1.8)
A 		5
avr 6.1
(-3) 		8.7
(3) 		8.1
(1.6) 		7.3
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 16.8
(3)
A 		7
(-3)
A 		8.6
(-2)
A 		12.5
(0.4)
A 		9.5
(-1.5)
A 		15
(1.9)
A 		10
B 9.4
(-0.5)
A 		6.6
(-2.6)
A 		10.7
(0.5)
A 		14
(3)
A 		6.1
(-3)
A 		13.8
(2.8)
A 		8
C 8.9
(-2.2)
A 		7.9
(-3)
A 		9.4
(-1.8)
A 		11.4
(-0.3)
A 		8.5
(-2.5)
A 		15.6
(3)
A 		8
avr 11.7
(0.6) 		7.2
(-3) 		9.6
(-1.1) 		12.6
(1.3) 		8
(-2.4) 		14.8
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.7
(-2.1)
A 		1.8
(-1.6)
A 		2.8
(3)
A 		1.5
(-3)
A 		1
B 2.1
(3)
A 		1.9
(1.5)
A 		2.1
(3)
A 		1.3
(-3)
A 		1
C 2.2
(0.8)
A 		2.9
(3)
A 		1.6
(-1.1)
A 		1
(-3)
A 		2
avr 2
(1.7) 		2.2
(3) 		2.2
(3) 		1.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.1
(1.2)
A 		2.5
(-0.9)
A 		1.9
(-3)
A 		3.2
(1.6)
A 		2.9
(0.5)
A 		3.6
(3)
A 		2
B 3.3
(-0.7)
A 		2.2
(-3)
A 		2.6
(-2.2)
A 		3.7
(0.1)
A 		2.5
(-2.4)
A 		5.1
(3)
A 		3
C 3.3
(-0.9)
A 		2.4
(-2.8)
A 		2.4
(-2.8)
A 		2.3
(-3)
A 		2.7
(-2.2)
A 		5.2
(3)
A 		3
avr 3.2
(-0.7) 		2.4
(-2.7) 		2.3
(-3) 		3.1
(-0.9) 		2.7
(-2) 		4.6
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17459
Sequence Type Exemplar sequence
Representative Public ID F23A7.1 NCBI
Target Description F23A7.1 /REP_DB=WormBase Gene ID /WP=CE09576 /TR=Q93553 /GB=CAB02975.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078241 NCBI Caenorhabditis elegans F23A7.1 (F23A7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042975 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16217322:16217510:1 11/11 None
F23A7.1 ENSEMBL cdna:known chromosome:CEL140:X:16217322:16217510:1 gene:F23A7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16217321-16217510(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23A7.1
Entrez Gene 181695 Entrez gene
SwissProt Q93553 EMBL-EBI
WormBase CE09576 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02975 Hypothetical protein F23A7.1 [Caenorhabditis elegans] ref|NP_510642.1| F23A7.1 [Caenorhabditis elegans] 4.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510642.1 1 39-58
F23A7.1 1 39-58
GENEFINDER00000042975 1 39-58
Sequence
Target Sequence 
>C. ELEGANS:179405_AT
atcactccaattgtcccaaaacttaccaagtacaacgtcgtcgtcgacatgcctgtctcc
atggagctctctgagcagaaaaccgcacctcacaaatcgaacaaacttgagctcatcgtc
tttgccggatttgttgtgcttgccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACTCCAATTGTCCCAAAACTTA 424 1 22 Antisense
TCCAATTGTCCCAAAACTTACCAAG 206 585 27 Antisense
CTTACCAAGTACAACGTCGTCGTCG 250 207 43 Antisense
TACAACGTCGTCGTCGACATGCCTG 653 639 52 Antisense
CTGTCTCCATGGAGCTCTCTGAGCA 18 241 74 Antisense
CTCTCTGAGCAGAAAACCGCACCTC 171 231 88 Antisense
AAACCGCACCTCACAAATCGAACAA 536 125 101 Antisense
CGCACCTCACAAATCGAACAAACTT 268 255 105 Antisense
GAACAAACTTGAGCTCATCGTCTTT 151 353 120 Antisense
CTCATCGTCTTTGCCGGATTTGTTG 381 229 133 Antisense
TGCCGGATTTGTTGTGCTTGCCGTC 223 585 144 Antisense
Sequence Source Affymetrix Proprietary Database