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[179404_at] 7TM chemoreceptor, srw family

Description T10H4.3 /REP_DB=WormBase Gene ID /WP=CE16388 /TR=O45773 /GB=CAB03332.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 17      6grp_cgc > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.2
(-3)
A 		3.6
(-2.5)
A 		10.3
(-0.1)
A 		19.2
(3)
A 		17
B 1.5
(-3)
A 		2
(-1.8)
A 		2.8
(0.1)
A 		4
(3)
A 		3
C 3.3
(-2.9)
A 		11.1
(-0.6)
A 		3.1
(-3)
A 		22.8
(3)
A 		20
avr 2.3
(-3) 		5.6
(-1.5) 		5.4
(-1.6) 		15.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 6.3
(-1.6)
A 		1.1
(-3)
A 		2.1
(-2.7)
A 		23.5
(3)
A 		3.8
(-2.3)
A 		1.3
(-2.9)
A 		22
B 6.8
(3)
A 		3.5
(-0.7)
A 		6.8
(3)
A 		2.9
(-1.4)
A 		2.5
(-1.9)
A 		1.5
(-3)
A 		5
C 3.1
(-2.6)
A 		27.3
(3)
A 		1.7
(-3)
A 		2.1
(-2.9)
A 		4.4
(-2.3)
A 		1.5
(-3)
A 		26
avr 5.4
(-0.4) 		10.6
(3) 		3.5
(-1.6) 		9.5
(2.3) 		3.6
(-1.6) 		1.4
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.8
(-3)
A 		0.8
(-3)
A 		2.7
(2.7)
A 		2.8
(3)
A 		2
B 0.5
(-3)
A 		0.5
(-3)
A 		0.7
(-0)
A 		0.9
(3)
A 		0
C 1.1
(-3)
A 		3.2
(1.7)
A 		1.1
(-3)
A 		3.8
(3)
A 		3
avr 0.8
(-3) 		1.5
(-0.5) 		1.5
(-0.5) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.2
(-2.1)
A 		0.4
(-2.9)
A 		0.5
(-2.8)
A 		6
(3)
A 		1.2
(-2.1)
A 		0.3
(-3)
A 		6
B 2.4
(3)
A 		1.2
(-0.8)
A 		1.7
(0.8)
A 		0.8
(-2.1)
A 		1
(-1.4)
A 		0.5
(-3)
A 		2
C 1.1
(-2.5)
A 		8.3
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1.4
(-2.2)
A 		0.5
(-2.9)
A 		8
avr 1.6
(-0.5) 		3.3
(3) 		0.9
(-2) 		2.4
(1.1) 		1.2
(-1.3) 		0.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13237
Sequence Type Exemplar sequence
Representative Public ID T10H4.3 NCBI
Target Description T10H4.3 /REP_DB=WormBase Gene ID /WP=CE16388 /TR=O45773 /GB=CAB03332.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074379 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-22) (srw-22) mRNA, complete cds. 11/11 None
T10H4.3 ENSEMBL cdna:known chromosome:CEL140:V:15271188:15272420:1 gene:T10H4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15271187-15272420(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-22
Ensembl T10H4.3
Entrez Gene 188392 Entrez gene
SwissProt O45773 EMBL-EBI
WormBase CE16388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03332 Hypothetical protein T10H4.3 [Caenorhabditis elegans] ref|NP_506780.1| Serpentine Receptor, class W family member (srw-22) [Caenorhabditis elegans] 0.0
blast CAB03333 Hypothetical protein T10H4.6 [Caenorhabditis elegans] ref|NP_506783.1| Serpentine Receptor, class W family member (srw-17) [Caenorhabditis elegans] 5.0E-42
blast CAB02828 Hypothetical protein C41G6.3 [Caenorhabditis elegans] ref|NP_506766.1| Serpentine Receptor, class W family member (srw-15) [Caenorhabditis elegans] 5.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506780.1 7 10-27,34-56,106-128,135-157,206-228,249-271,286-308
T10H4.3 7 10-27,34-56,106-128,135-157,206-228,249-271,286-308
Sequence
Target Sequence 
>C. ELEGANS:179404_AT
gatgcttgggcagcagtctttcttcaaattcagtggctaccagatataatggtgaagaac
aataaaaattgcaagccatcaaaatctgctaatgagaaatatgttttagtagttgatcaa
tcaaattttgatttgacaaatcagttatgttttattgaaattataattcgtttcttccaa
actcttctttacccaatgctaactttaacactacttttacaattgcacatgataaaaaag
aaacgcattatatcttcacaaaatgataaagttgaaaatcgaaatctcaccaatttaatt
atatttatgactgtgagctttatgttggccgaaggacttgttggctttaatggagttgtg
atgtattgcacttttgtcgtcgaagtttgggataaaaagtggataatttacgcgggcgct
gccagcaatcttattgtaaatttacgagctctgaactctctgtctcatttgtttgtatgt
ctttttatgtcttctcagtaccgggagactactctgaaatttgacaagtttttcacaagt
gctaagcaatcaaccgtggtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCTTGGGCAGCAGTCTTTCTTC 108 413 463 Antisense
GTCTTTCTTCAAATTCAGTGGCTAC 290 469 478 Antisense
TCTTCTTTACCCAATGCTAACTTTA 329 617 645 Antisense
GACTGTGAGCTTTATGTTGGCCGAA 305 375 771 Antisense
GATGTATTGCACTTTTGTCGTCGAA 552 409 822 Antisense
TGGATAATTTACGCGGGCGCTGCCA 87 549 862 Antisense
GGCGCTGCCAGCAATCTTATTGTAA 330 541 877 Antisense
TTTACGAGCTCTGAACTCTCTGTCT 550 673 903 Antisense
GAACTCTCTGTCTCATTTGTTTGTA 441 349 915 Antisense
GTATGTCTTTTTATGTCTTCTCAGT 41 457 937 Antisense
GTGCTAAGCAATCAACCGTGGTCAA 423 479 1001 Antisense
Sequence Source Affymetrix Proprietary Database