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[179403_at]

Description F57A8.6 /REP_DB=WormBase Gene ID /WP=CE05987 /TR=Q20917 /GB=CAA94834.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 94      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 54.3
(-3)
M 		66.8
(-2.2)
P 		87.7
(-0.9)
P 		149.5
(3)
P 		95
B 56
(-2.9)
A 		54.9
(-3)
A 		74
(-0.7)
P 		104.3
(3)
P 		49
C 57.6
(-2.9)
A 		93.5
(-1.2)
A 		54.6
(-3)
M 		186.3
(3)
P 		132
avr 56
(-3) 		71.7
(-2) 		72.1
(-1.9) 		146.7
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 47
(-3)
A 		73.4
(-1.1)
A 		92.1
(0.2)
P 		105.7
(1.2)
P 		130.8
(3)
P 		102.6
(1)
P 		84
B 56.6
(-2.4)
P 		44.4
(-3)
M 		82.9
(-1)
P 		93.7
(-0.5)
P 		162.2
(3)
P 		105.5
(0.1)
P 		118
C 65.2
(-0.7)
P 		111.6
(3)
P 		37.3
(-3)
A 		86.3
(1)
P 		63.4
(-0.9)
P 		90.8
(1.3)
P 		74
avr 56.3
(-3) 		76.5
(-1.1) 		70.8
(-1.6) 		95.2
(0.7) 		118.8
(3) 		99.6
(1.2) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.8
(0.8)
M 		14.5
(-3)
P 		22.9
(3)
P 		21.9
(2.3)
P 		8
B 17.9
(-0)
A 		13.6
(-3)
A 		17.1
(-0.6)
P 		22.2
(3)
P 		9
C 19.1
(-3)
A 		26.9
(0.8)
A 		19
(-3)
M 		31.4
(3)
P 		12
avr 18.9
(-2.5) 		18.3
(-3) 		19.7
(-1.8) 		25.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 8.7
(-3)
A 		26.1
(0.4)
A 		20
(-0.8)
P 		26.8
(0.5)
P 		39.5
(3)
P 		25
(0.2)
P 		31
B 19.7
(-2.4)
P 		14.8
(-3)
M 		20.1
(-2.4)
P 		24.8
(-1.8)
P 		65.9
(3)
P 		39.3
(-0.1)
P 		51
C 24.2
(0.6)
P 		34.1
(3)
P 		9.5
(-3)
A 		17.4
(-1.1)
P 		20.5
(-0.3)
P 		30.4
(2.1)
P 		25
avr 17.5
(-2.8) 		25
(-1) 		16.5
(-3) 		23
(-1.5) 		42
(3) 		31.6
(0.6) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11694
Sequence Type Exemplar sequence
Representative Public ID F57A8.6 NCBI
Target Description F57A8.6 /REP_DB=WormBase Gene ID /WP=CE05987 /TR=Q20917 /GB=CAA94834.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073184 NCBI Caenorhabditis elegans F57A8.6 (F57A8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000034045 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10074312:10078282:-1 11/11 None
F57A8.6 ENSEMBL cdna:known chromosome:CEL140:V:10074526:10076474:-1 gene:F57A8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034038 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10074525-10076474(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57A8.6
Entrez Gene 179401 Entrez gene
SwissProt Q20917 EMBL-EBI
WormBase CE05987 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94834 Hypothetical protein F57A8.6 [Caenorhabditis elegans] ref|NP_505585.1| F57A8.6 [Caenorhabditis elegans] 0.0
blast CAE64015 Hypothetical protein CBG08610 [Caenorhabditis briggsae] 3.0E-67
blast CAE64015 Hypothetical protein CBG08610 [Caenorhabditis briggsae] 7.0E-52
blast AAB52472 Hypothetical protein T10E9.4 [Caenorhabditis elegans] ref|NP_491879.1| T10E9.4 [Caenorhabditis elegans] 4.0E-20
blast AAB52472 Hypothetical protein T10E9.4 [Caenorhabditis elegans] ref|NP_491879.1| T10E9.4 [Caenorhabditis elegans] 5.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 4.2E-51
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 4.2E-51
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034045 1 466-488
Sequence
Target Sequence 
>C. ELEGANS:179403_AT
gcgtatttaacgatgctctagacacgagtggatgttgttatagagacacctcaaacttct
gttcagaggggatgtcagtgttgccatctcaacgatgtgatacccttgatgactgtaata
tgcgaacaaatcaaactgcgcaaagatggtgtgatcccgtttcaaaatattgctgtcgat
ttgaaaaggaacaagcacttttatgcccggacaacagtacagctttaatgaatgaacatc
attgtattaactacgacgaaaaagatatttggagtggaaagtgtaagacaccgaacggaa
tttgcaaatatggacactgttgcccatcaaataaaactgaaaaattgttacctggaactc
catatcgcactcatcaaaagtgcactaacaaaacaattattcgtgatgatcaacgttttg
gatactgtgatcctaaaaccggaagggtattcataatgagtgaactcaattttcacgggc
agagaaacaaggaactctcgtcatactgtaatactgcaagagattgcggtcggtcgtttg
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTATTTAACGATGCTCTAGACAC 303 291 548 Antisense
GAGACACCTCAAACTTCTGTTCAGA 454 393 590 Antisense
GGGATGTCAGTGTTGCCATCTCAAC 589 495 616 Antisense
ACGATGTGATACCCTTGATGACTGT 668 93 639 Antisense
AAGATGGTGTGATCCCGTTTCAAAA 621 153 690 Antisense
GGAACAAGCACTTTTATGCCCGGAC 427 527 735 Antisense
ATGCCCGGACAACAGTACAGCTTTA 518 39 750 Antisense
ATATGGACACTGTTGCCCATCAAAT 232 21 855 Antisense
GTTACCTGGAACTCCATATCGCACT 41 445 894 Antisense
GGAACTCTCGTCATACTGTAATACT 640 529 1038 Antisense
AAGAGATTGCGGTCGGTCGTTTGGA 118 155 1065 Antisense
Sequence Source Affymetrix Proprietary Database