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[179402_at]

Description F52H3.5 /REP_DB=WormBase Gene ID /WP=CE03401 /TR=Q20683 /GB=CAA91325.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 54      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 76      6grp_total > 44      4grp_total > 40      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 438
1 2 3 4 range
A 1387.8
(-3)
P 		1766.4
(2.2)
P 		1817.6
(2.9)
P 		1825.5
(3)
P 		438
B 1547.9
(-3)
P 		1596.6
(-1.9)
P 		1806.3
(3)
P 		1686.4
(0.2)
P 		258
C 1460.2
(-3)
P 		1650.9
(0.3)
P 		1807.4
(3)
P 		1568.1
(-1.1)
P 		347
avr 1465.3
(-3) 		1671.3
(0.6) 		1810.4
(3) 		1693.3
(1) 		345

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 1425.3
(3)
P 		1132
(-0.5)
P 		1364.6
(2.3)
P 		1219.1
(0.5)
P 		928.3
(-3)
P 		1236.8
(0.7)
P 		497
B 1225.9
(-0.7)
P 		1197
(-1)
P 		1549.1
(3)
P 		1082.5
(-2.3)
P 		1022.6
(-3)
P 		1235.5
(-0.6)
P 		527
C 1199.7
(1.1)
P 		1293.3
(2.3)
P 		1342
(3)
P 		1179.5
(0.8)
P 		895
(-3)
P 		1242.9
(1.7)
P 		447
avr 1283.6
(1.3) 		1207.4
(0.3) 		1418.6
(3) 		1160.4
(-0.3) 		948.6
(-3) 		1238.4
(0.7) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 505.3
(3)
P 		383.4
(-0.1)
P 		475.2
(2.2)
P 		267.2
(-3)
P 		238
B 493.6
(3)
P 		394.3
(-1.4)
P 		418.6
(-0.4)
P 		359.4
(-3)
P 		134
C 483.4
(0.6)
P 		474.7
(0.5)
P 		629.9
(3)
P 		264.4
(-3)
P 		366
avr 494.1
(2.6) 		417.5
(0.4) 		507.9
(3) 		297
(-3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 262.7
(-3)
P 		402.6
(3)
P 		297.2
(-1.5)
P 		309.2
(-1)
P 		280.1
(-2.3)
P 		301.1
(-1.4)
P 		140
B 426.5
(1.8)
P 		398.4
(0.9)
P 		376.2
(0.1)
P 		286.7
(-3)
P 		415.5
(1.4)
P 		460.7
(3)
P 		174
C 444.7
(3)
P 		394.6
(1.6)
P 		341.6
(0)
P 		237.2
(-3)
P 		289.6
(-1.5)
P 		416.1
(2.2)
P 		208
avr 378
(2) 		398.5
(3) 		338.3
(0) 		277.7
(-3) 		328.4
(-0.5) 		392.6
(2.7) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3959
Sequence Type Exemplar sequence
Representative Public ID F52H3.5 NCBI
Target Description F52H3.5 /REP_DB=WormBase Gene ID /WP=CE03401 /TR=Q20683 /GB=CAA91325.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063767 NCBI Caenorhabditis elegans F52H3.5 (F52H3.5) mRNA, complete cds. 11/11 None
SNAP00000021624 ENSEMBL cdna:SNAP chromosome:CEL140:II:10030117:10030803:1 11/11 None
GENEFINDER00000021629 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10030117:10030803:1 11/11 None
F52H3.5 ENSEMBL cdna:known chromosome:CEL140:II:10030117:10030881:1 gene:F52H3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10030113-10030800(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F52H3.5
Entrez Gene 174562 Entrez gene
SwissProt Q20683 EMBL-EBI
WormBase CE03401 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18657.1.S1_S_AT similar to F52H3.5 cfa
DROSOPHILA_2:1625624_AT dm
DROSGENOME1:148709_AT dm
CHICKEN:GGA.11720.1.S1_AT similar to CDNA sequence BC021608 gga
U133_X3P:HS.163467.0.A1_3P_X_AT similar to CDNA sequence BC021608 hs
U133_X3P:HS.163467.0.A1_3P_AT similar to CDNA sequence BC021608 hs
HG-U133_PLUS_2:237350_AT similar to CDNA sequence BC021608 hs
HG-U133B:237350_AT similar to CDNA sequence BC021608 hs
HG-U95E:84059_AT similar to CDNA sequence BC021608 hs
HU35KSUBA:W55861_AT Similar to CDNA sequence BC021608 hs
HU35KSUBA:AA280085_AT Similar to CDNA sequence BC021608 hs
HU35KSUBC:RC_AA400896_AT Similar to CDNA sequence BC021608 hs
U133_X3P:HS.199160.1.A5_3P_AT Similar to CDNA sequence BC021608 hs
U133_X3P:HS.199160.0.S1_3P_AT Similar to CDNA sequence BC021608 hs
HG-U133A_2:212080_AT Similar to CDNA sequence BC021608 hs
HG-FOCUS:212080_AT Similar to CDNA sequence BC021608 hs
HG-U133_PLUS_2:212080_AT Similar to CDNA sequence BC021608 hs
HG-U133A:212080_AT Similar to CDNA sequence BC021608 hs
HG-U133_PLUS_2:226981_AT Similar to CDNA sequence BC021608 hs
HG-U133B:226981_AT Similar to CDNA sequence BC021608 hs
HG-U95B:47565_AT Similar to CDNA sequence BC021608 hs
HG-U95C:63869_AT Similar to CDNA sequence BC021608 hs
HG-U95C:65288_AT Similar to CDNA sequence BC021608 hs
MG-U74BV2:107546_AT cDNA sequence BC021608 mm
MOE430A:1418696_AT cDNA sequence BC021608 mm
MOUSE430A_2:1418696_AT cDNA sequence BC021608 mm
MOUSE430_2:1418696_AT cDNA sequence BC021608 mm
MU19KSUBA:TC14942_AT CDNA sequence BC021608 (BC021608), mRNA mm
RG-U34A:RC_AA891739_AT similar to cDNA sequence BC021608 rn
RAE230A:1393061_AT similar to cDNA sequence BC021608 rn
RAT230_2:1393061_AT similar to cDNA sequence BC021608 rn
Protein Similarities
Method ID Description E-Value
blast CAA91325 Hypothetical protein F52H3.5 [Caenorhabditis elegans] ref|NP_496168.1| F52H3.5 [Caenorhabditis elegans] 2.0E-96
blast CAE67797 Hypothetical protein CBG13375 [Caenorhabditis briggsae] 2.0E-81
blast XP_546500 PREDICTED: similar to F52H3.5 [Canis familiaris] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 0.0041
Pfam IPR001440 EMBL-EBI TPR repeat 4.7E-8
Pfam IPR001440 EMBL-EBI TPR repeat 0.021
Sequence
Target Sequence 
>C. ELEGANS:179402_AT
aatgcctacatcggattctggaattgctgaaattcatttagaatcagatagtttggagca
tccaggctatgagctcagtttgcagctcgagagagaaggtgtcgcgttggcagaaggtgt
acggttggatgaagctattgagaagtttacaaaagcactcgaagtttgcccgaaaaatcc
atccgcgtacaacaaccgagcacaagcataccgacttcaaaataaaccagaaaaggccct
cgacgatcttaacgaagctctatcattagctggaccaaaaacaaaaactgcctgccaagc
atacgtacagagagctagcatctatagattgagaggagatgatgataaagctagaaccga
tttcgcatcagcagccgagttgggatcctcgttcgccaaaatgcagttggtggcactgaa
cccatatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCCTACATCGGATTCTGGAATT 421 167 63 Antisense
GCATCCAGGCTATGAGCTCAGTTTG 181 309 120 Antisense
GAGAGAGAAGGTGTCGCGTTGGCAG 710 393 151 Antisense
GAAGTTTGCCCGAAAAATCCATCCG 62 337 223 Antisense
ACAACCGAGCACAAGCATACCGACT 187 113 254 Antisense
GAAGCTCTATCATTAGCTGGACCAA 593 341 316 Antisense
AACTGCCTGCCAAGCATACGTACAG 19 141 348 Antisense
TAGAACCGATTTCGCATCAGCAGCC 464 651 414 Antisense
CAGCAGCCGAGTTGGGATCCTCGTT 284 205 431 Antisense
GATCCTCGTTCGCCAAAATGCAGTT 220 417 446 Antisense
GTTGGTGGCACTGAACCCATATGCT 432 437 468 Antisense
Sequence Source Affymetrix Proprietary Database