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[179401_at]

Description ZK662.2 /REP_DB=WormBase Gene ID /WP=CE15377 /TR=Q94406 /GB=CAB01898.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      6grp_highest_nonorm > 69      6grp_total > 84      4grp_total > 49      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4500
1 2 3 4 range
A 18.1
(-3)
A 		4299.8
(2.7)
P 		4518.4
(3)
P 		150
(-2.8)
A 		4500
B 93.6
(-3)
A 		3936.6
(2.9)
P 		3983.7
(3)
P 		77.5
(-3)
A 		3906
C 79.3
(-3)
A 		3486.1
(2.2)
P 		4047.4
(3)
P 		107.1
(-3)
A 		3968
avr 63.7
(-3) 		3907.5
(2.6) 		4183.2
(3) 		111.5
(-2.9) 		4120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2812
1 2 3 4 5 6 range
A 734.9
(-3)
P 		2134.8
(0.3)
P 		1640.4
(-0.9)
P 		2380.1
(0.8)
P 		3200.4
(2.7)
P 		3318.2
(3)
P 		2583
B 665.4
(-3)
P 		2205.8
(0.8)
P 		1713.4
(-0.4)
P 		2498.6
(1.5)
P 		3096.1
(3)
P 		2620.2
(1.8)
P 		2431
C 514.1
(-3)
P 		1931.3
(0)
P 		1925.2
(0)
P 		2291
(0.8)
P 		3326.4
(3)
P 		2626.4
(1.5)
P 		2812
avr 638.1
(-3) 		2090.6
(0.4) 		1759.7
(-0.4) 		2389.9
(1.1) 		3207.6
(3) 		2854.9
(2.2) 		2570
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1404
1 2 3 4 range
A 6.6
(-3)
A 		933.4
(1.7)
P 		1181.2
(3)
P 		22
(-2.9)
A 		1175
B 29.8
(-2.9)
A 		972.2
(3)
P 		923.1
(2.7)
P 		16.5
(-3)
A 		956
C 26.2
(-3)
A 		1002.3
(1.2)
P 		1410.7
(3)
P 		18.1
(-3)
A 		1393
avr 20.9
(-3) 		969.3
(1.9) 		1171.7
(3) 		18.9
(-3) 		1153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1122
1 2 3 4 5 6 range
A 135.5
(-3)
P 		759.2
(1.5)
P 		357.3
(-1.4)
P 		603.7
(0.4)
P 		965.7
(3)
P 		807.9
(1.9)
P 		830
B 231.5
(-3)
P 		734.2
(-0.1)
P 		416.1
(-1.9)
P 		661.8
(-0.5)
P 		1257.9
(3)
P 		977.1
(1.4)
P 		1026
C 190.6
(-3)
P 		589.3
(-0.3)
P 		490
(-1)
P 		460.7
(-1.2)
P 		1076.4
(3)
P 		879.2
(1.7)
P 		886
avr 185.9
(-3) 		694.2
(0.3) 		421.1
(-1.5) 		575.4
(-0.4) 		1100
(3) 		888.1
(1.6) 		914
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17671
Sequence Type Exemplar sequence
Representative Public ID ZK662.2 NCBI
Target Description ZK662.2 /REP_DB=WormBase Gene ID /WP=CE15377 /TR=Q94406 /GB=CAB01898.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078183 NCBI Caenorhabditis elegans ZK662.2 (ZK662.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025420 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15696680:15697893:1 11/11 None
SNAP00000025414 ENSEMBL cdna:SNAP chromosome:CEL140:X:15697310:15697893:1 10/11 None
ZK662.2 ENSEMBL cdna:known chromosome:CEL140:X:15696680:15697977:1 gene:ZK662.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15696679-15697893(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK662.2
Entrez Gene 181660 Entrez gene
SwissProt Q94406 EMBL-EBI
WormBase CE15377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01898 Hypothetical protein ZK662.2 [Caenorhabditis elegans] ref|NP_510584.1| ZK662.2 [Caenorhabditis elegans] 1.0E-127
blast CAE63354 Hypothetical protein CBG07758 [Caenorhabditis briggsae] 1.0E-116
blast CAB01898 Hypothetical protein ZK662.2 [Caenorhabditis elegans] ref|NP_510584.1| ZK662.2 [Caenorhabditis elegans] 3.0E-86
blast CAE63354 Hypothetical protein CBG07758 [Caenorhabditis briggsae] 4.0E-81
Sequence
Target Sequence 
>C. ELEGANS:179401_AT
gtgccgacgccatagctacaaagaccaacaactgcaagaagaaggctgaatgcacaaatt
tcttgaaggaaattggagatgcgacaaaaattatggcttgcttggatgctgatcacgagc
agatgatgaaagttgaggcttgcgccaagaagaagttgaatggagaacttggatgcacca
actccgctactccagtgaacctgactatccctcttattccagtaatcgagattccatcat
tggaagagtctggagcagttgcagtcggagagcaagcttcgggccaagctgagccaccac
tccaacttagacaatacctgatgtgcatcgatgagtgcactcatgacgatatggaagtta
ttccaggaagaaagaagagaagtccagctacgtgtgccttcaagctcaagtgtgctctgg
ctccaccatccgattctacacaatctgcctataccgagtgtcaaaaagagctcggctacg
atccagtaaagggagctgccgattcctgcaaatgcctcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCGACGCCATAGCTACAAAGAC 658 477 128 Antisense
GGCTTGCTTGGATGCTGATCACGAG 4 537 222 Antisense
AGAACTTGGATGCACCAACTCCGCT 583 71 291 Antisense
GCTACTCCAGTGAACCTGACTATCC 352 303 313 Antisense
ACTATCCCTCTTATTCCAGTAATCG 690 101 331 Antisense
GCAGTCGGAGAGCAAGCTTCGGGCC 450 311 388 Antisense
CCACCACTCCAACTTAGACAATACC 466 273 421 Antisense
AAGAGAAGTCCAGCTACGTGTGCCT 403 153 502 Antisense
GTGCCTTCAAGCTCAAGTGTGCTCT 400 477 521 Antisense
ATTCTACACAATCTGCCTATACCGA 372 9 560 Antisense
GCCGATTCCTGCAAATGCCTCAAAT 650 283 625 Antisense
Sequence Source Affymetrix Proprietary Database