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[179400_at] 7TM chemoreceptor, srw family

Description W06G6.8 /REP_DB=WormBase Gene ID /WP=CE19012 /TR=Q9XU59 /GB=CAB05643.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 26      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 0.7
(-3)
A 		1.5
(-2.9)
A 		1.3
(-2.9)
A 		44.5
(3)
A 		44
B 2.5
(-1.7)
A 		9.4
(3)
A 		0.5
(-3)
A 		3.6
(-0.9)
A 		9
C 2.3
(-3)
A 		25.5
(3)
A 		12.6
(-0.3)
A 		14.2
(0.1)
A 		23
avr 1.8
(-3) 		12.1
(0.3) 		4.8
(-2.1) 		20.8
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.2
(3)
A 		1.4
(-2.7)
A 		1.1
(-2.9)
A 		5.7
(0.4)
A 		1
(-3)
A 		1
(-3)
A 		8
B 2
(0.5)
A 		3
(3)
A 		1.1
(-1.8)
A 		1.1
(-1.8)
A 		1.3
(-1.3)
A 		0.6
(-3)
A 		2
C 2.6
(-2.3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		15.9
(3)
A 		0.9
(-3)
A 		0.8
(-3)
A 		15
avr 4.6
(0.4) 		1.8
(-2.1) 		1.1
(-2.7) 		7.6
(3) 		1.1
(-2.7) 		0.8
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.2
(-3)
A 		0.3
(-2.9)
A 		0.3
(-2.9)
A 		6.5
(3)
A 		6
B 0.8
(-1.1)
A 		2.3
(3)
A 		0.1
(-3)
A 		0.8
(-1.1)
A 		2
C 0.8
(-3)
A 		7.3
(3)
A 		4.4
(0.3)
A 		2.4
(-1.5)
A 		7
avr 0.6
(-3) 		3.3
(3) 		1.6
(-0.8) 		3.2
(2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.7
(3)
A 		0.5
(-1.8)
A 		0.2
(-3)
A 		1.4
(1.8)
A 		0.3
(-2.6)
A 		0.3
(-2.6)
A 		2
B 0.7
(0.8)
A 		1
(3)
A 		0.3
(-2.3)
A 		0.3
(-2.3)
A 		0.5
(-0.8)
A 		0.2
(-3)
A 		1
C 1
(-1.6)
A 		0.3
(-3)
A 		0.3
(-3)
A 		3.2
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		3
avr 1.1
(0.7) 		0.6
(-1.6) 		0.3
(-3) 		1.6
(3) 		0.4
(-2.5) 		0.3
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179400_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12948
Sequence Type Exemplar sequence
Representative Public ID W06G6.8 NCBI
Target Description W06G6.8 /REP_DB=WormBase Gene ID /WP=CE19012 /TR=Q9XU59 /GB=CAB05643.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074810 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-77) (srw-77) mRNA, complete cds. 11/11 None
SNAP00000000232 ENSEMBL cdna:SNAP chromosome:CEL140:V:16644387:16647612:-1 11/11 None
GENEFINDER00000000241 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16644313:16647819:-1 9/11 None
W06G6.8 ENSEMBL cdna:known chromosome:CEL140:V:16644431:16646240:-1 gene:W06G6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16644430-16646240(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-77
Ensembl W06G6.8
Entrez Gene 189258 Entrez gene
SwissProt Q9XU59 EMBL-EBI
WormBase CE19012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05643 Hypothetical protein W06G6.8 [Caenorhabditis elegans] ref|NP_507211.1| Serpentine Receptor, class W family member (srw-77) [Caenorhabditis elegans] 0.0
blast CAB05643 Hypothetical protein W06G6.8 [Caenorhabditis elegans] ref|NP_507211.1| Serpentine Receptor, class W family member (srw-77) [Caenorhabditis elegans] 1.0E-179
blast CAB76728 Hypothetical protein W06G6.13 [Caenorhabditis elegans] ref|NP_507208.1| Serpentine Receptor, class W family member (srw-75) [Caenorhabditis elegans] 1.0E-106
blast CAB76728 Hypothetical protein W06G6.13 [Caenorhabditis elegans] ref|NP_507208.1| Serpentine Receptor, class W family member (srw-75) [Caenorhabditis elegans] 1.0E-105
blast CAB04139 Hypothetical protein F20E11.6 [Caenorhabditis elegans] ref|NP_507422.1| Serpentine Receptor, class W family member (srw-72) [Caenorhabditis elegans] 1.0E-102
blast CAB04139 Hypothetical protein F20E11.6 [Caenorhabditis elegans] ref|NP_507422.1| Serpentine Receptor, class W family member (srw-72) [Caenorhabditis elegans] 1.0E-98
blast CAB05643 Hypothetical protein W06G6.8 [Caenorhabditis elegans] ref|NP_507211.1| Serpentine Receptor, class W family member (srw-77) [Caenorhabditis elegans] 3.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507211.1 7 15-37,54-76,106-121,133-155,204-226,248-270,285-307
W06G6.8 7 15-37,54-76,106-121,133-155,204-226,248-270,285-307
SNAP00000000232 7 20-42,55-77,110-125,137-159,208-230,252-274,289-311
GENEFINDER00000000241 2 101-123,152-174
Sequence
Target Sequence 
>C. ELEGANS:179400_AT
gatggtcccatggcaacctggaaaacgatgcagtgaatttcccaaaggatacagtgagaa
cctatatgttcgaaccattcaagatcaggctagttatatggcggtctttggcaattatag
tatcataggcggaatgtccaagattcttatcagcgtcctatacccagttttagcagtatt
tttgatttttgatatcaggaagtctgcgaaacatgcgtcgacagctaatagcaaaaaggc
ggctaaggaaagataccacactggacgtatgattcttctgatggcagtattatacacaat
taccagtgctcctggaggaatatccaaatttattacgctctactgcaaagttcctgatgg
ttcaattttgatgctgcttattggatacggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTCCCATGGCAACCTGGAAAA 201 407 501 Antisense
AAAACGATGCAGTGAATTTCCCAAA 495 129 522 Antisense
TCGAACCATTCAAGATCAGGCTAGT 291 547 570 Antisense
CAGGCTAGTTATATGGCGGTCTTTG 538 209 586 Antisense
GTCCAAGATTCTTATCAGCGTCCTA 509 477 636 Antisense
GCGTCCTATACCCAGTTTTAGCAGT 643 291 653 Antisense
GTCTGCGAAACATGCGTCGACAGCT 478 471 702 Antisense
GGACGTATGATTCTTCTGATGGCAG 189 525 763 Antisense
TCCAAATTTATTACGCTCTACTGCA 644 587 823 Antisense
GCTCTACTGCAAAGTTCCTGATGGT 269 301 837 Antisense
TTGATGCTGCTTATTGGATACGGTT 497 699 868 Antisense
Sequence Source Affymetrix Proprietary Database