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[179399_at]

Description W07A8.4 /REP_DB=WormBase Gene ID /WP=CE20160 /TR=Q9XUK5 /GB=CAB04931.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 38      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 8.4
(3)
A 		5.8
(-0.6)
A 		4.1
(-3)
A 		7.6
(1.9)
A 		4
B 9.2
(3)
A 		5.6
(-1)
A 		3.9
(-2.9)
A 		3.8
(-3)
A 		5
C 4.3
(-3)
A 		5.1
(0.7)
A 		4.4
(-2.5)
A 		5.6
(3)
A 		1
avr 7.3
(3) 		5.5
(-0.4) 		4.1
(-3) 		5.7
(0) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 5.1
(1.3)
A 		4.9
(0.7)
A 		5.6
(3)
A 		3.8
(-3)
A 		4.1
(-2)
A 		3.8
(-3)
A 		2
B 4.1
(1.2)
A 		4.9
(3)
A 		3
(-1.4)
A 		3.1
(-1.2)
A 		2.3
(-3)
A 		3.6
(-0)
A 		3
C 4.8
(0.4)
A 		5.5
(1.4)
A 		4.5
(-0.1)
A 		3.2
(-2)
A 		2.5
(-3)
A 		6.6
(3)
A 		4
avr 4.7
(1.9) 		5.1
(3) 		4.4
(1) 		3.4
(-1.9) 		3
(-3) 		4.7
(1.9) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 3.1
(3)
A 		1.3
(-2.4)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2
B 2.9
(3)
A 		1.4
(-1.3)
A 		0.9
(-2.7)
A 		0.8
(-3)
A 		2
C 1.4
(2)
A 		1.5
(3)
A 		1.5
(3)
A 		0.9
(-3)
A 		1
avr 2.5
(3) 		1.4
(-1.1) 		1.2
(-1.9) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.7
(3)
A 		1.2
(-0.8)
A 		1
(-2.3)
A 		1.2
(-0.8)
A 		0.9
(-3)
A 		1
B 1.4
(1.7)
A 		1.6
(3)
A 		0.7
(-3)
A 		0.8
(-2.3)
A 		0.9
(-1.7)
A 		1.3
(1)
A 		1
C 1.8
(1.5)
A 		1.7
(1.1)
A 		1.2
(-0.8)
A 		0.6
(-3)
A 		0.8
(-2.3)
A 		2.2
(3)
A 		2
avr 1.4
(1) 		1.7
(3) 		1
(-1.7) 		0.8
(-3) 		1
(-1.7) 		1.5
(1.7) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13614
Sequence Type Exemplar sequence
Representative Public ID W07A8.4 NCBI
Target Description W07A8.4 /REP_DB=WormBase Gene ID /WP=CE20160 /TR=Q9XUK5 /GB=CAB04931.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W07A8.4 ENSEMBL cdna:known chromosome:CEL140:V:20731440:20732511:1 gene:W07A8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017805 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20731439-20732511(+) 100.0 100.0
Public Domain and Genome References
Ensembl W07A8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26260 hypothetical protein W07A8.4 - Caenorhabditis elegans 0.0
blast CAA93501 Hypothetical protein F56D5.10 [Caenorhabditis elegans] ref|NP_501663.1| Serpentine Receptor, class XA family member (srxa-2) [Caenorhabditis elegans] 5.0E-79
blast CAB04930 Hypothetical protein W07A8.1 [Caenorhabditis elegans] ref|NP_508003.1| Serpentine Receptor, class XA family member (srxa-1) [Caenorhabditis elegans] 2.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 3.9E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
W07A8.4 7 10-32,44-65,91-110,123-145,182-204,225-247,284-306
Sequence
Target Sequence 
>C. ELEGANS:179399_AT
cgatcaaggcagctgggtggtctccgagttgcgcctttttggatattgtattattgatgg
cctggttatcgataccatacttttccgactgctccacaaacttcagtgctttaacgagca
gagtggtttcaggttgtgctcccgacaaacatccggtaactacacttacattgtttcaaa
acaaatacttgatttatgtgccgttagtttctatgctggtgaattcatctataatcatat
atctcaagttgtcaaggaaaatgtcaggaaaaactgttttttctcggagccacgtgaaac
gagaaaatataatgattcgtcaagcactgatcattggaatctatctgagcgtctacgaga
tactgtatcttcacttgagactttaccccgtaagatttgcaggtacatttccgcttatag
gaaattcctttcaggagcatttcgaatcgctacccctccaagttcagtccatttcatatg
acctccgtttgttcgcaatcggctcgttgaacttcttcgtttactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCAAGGCAGCTGGGTGGTCTCC 309 249 371 Antisense
TCTCCGAGTTGCGCCTTTTTGGATA 180 601 391 Antisense
GACTGCTCCACAAACTTCAGTGCTT 19 375 457 Antisense
TGCTCCCGACAAACATCCGGTAACT 633 579 507 Antisense
GTGCCGTTAGTTTCTATGCTGGTGA 641 477 568 Antisense
TGGAATCTATCTGAGCGTCTACGAG 355 547 705 Antisense
GTATCTTCACTTGAGACTTTACCCC 259 455 735 Antisense
TTGCAGGTACATTTCCGCTTATAGG 459 703 767 Antisense
CAGGAGCATTTCGAATCGCTACCCC 13 209 802 Antisense
CATTTCATATGACCTCCGTTTGTTC 293 215 840 Antisense
GCTCGTTGAACTTCTTCGTTTACTT 280 299 872 Antisense
Sequence Source Affymetrix Proprietary Database