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[179398_at]

Description F16H6.7 /REP_DB=WormBase Gene ID /WP=CE18603 /TR=Q9XV94 /GB=CAB04125.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 85      6grp_total > 65      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 20.9
(-3)
A 		101.3
(-0.4)
P 		55.9
(-1.9)
A 		205.3
(3)
P 		184
B 30.6
(-3)
A 		102.8
(-0.9)
P 		52.6
(-2.4)
P 		237.1
(3)
P 		207
C 43.8
(-3)
M 		64.5
(-2.1)
P 		82.6
(-1.3)
P 		178.9
(3)
P 		135
avr 31.8
(-3) 		89.5
(-1) 		63.7
(-1.9) 		207.1
(3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 36.1
(-3)
A 		87.2
(-0.3)
P 		118
(1.4)
P 		101
(0.5)
P 		97.7
(0.3)
P 		148.9
(3)
P 		113
B 62.2
(-2.3)
P 		113.7
(1)
P 		90.5
(-0.5)
P 		51.4
(-3)
P 		75.1
(-1.5)
P 		143.7
(3)
P 		92
C 64.9
(-2.8)
P 		63.1
(-3)
P 		127.4
(3)
P 		82.3
(-1.2)
P 		87
(-0.8)
P 		117.9
(2.1)
P 		64
avr 54.4
(-3) 		88
(-0.6) 		112
(1.2) 		78.2
(-1.3) 		86.6
(-0.7) 		136.8
(3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 7.6
(-3)
A 		22
(0.8)
P 		14.6
(-1.1)
A 		30.1
(3)
P 		23
B 9.7
(-3)
A 		25.4
(-0.7)
P 		12.2
(-2.6)
P 		50.5
(3)
P 		41
C 14.5
(-3)
M 		18.5
(-1.5)
P 		28.8
(2.5)
P 		30.2
(3)
P 		16
avr 10.6
(-3) 		22
(-0.4) 		18.5
(-1.2) 		36.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 6.7
(-3)
A 		31
(1.9)
P 		25.7
(0.9)
P 		25.6
(0.8)
P 		29.5
(1.6)
P 		36.2
(3)
P 		30
B 21.6
(-1.8)
P 		37.8
(0.6)
P 		22
(-1.7)
P 		13.6
(-3)
P 		30.5
(-0.5)
P 		53.6
(3)
P 		40
C 24
(-1.1)
P 		19.2
(-2.3)
P 		32.4
(1.1)
P 		16.6
(-3)
P 		28.2
(0)
P 		39.5
(3)
P 		23
avr 17.4
(-3) 		29.3
(-0.2) 		26.7
(-0.8) 		18.6
(-2.7) 		29.4
(-0.2) 		43.1
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13637
Sequence Type Exemplar sequence
Representative Public ID F16H6.7 NCBI
Target Description F16H6.7 /REP_DB=WormBase Gene ID /WP=CE18603 /TR=Q9XV94 /GB=CAB04125.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075161 NCBI Caenorhabditis elegans F16H6.7 (F16H6.7) mRNA, complete cds. 11/11 None
GENEFINDER00000001304 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18209756:18217434:-1 11/11 None
F16H6.7 ENSEMBL cdna:known chromosome:CEL140:V:18209756:18211148:-1 gene:F16H6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001298 3/11 Cross Hyb Matching Probes None
SNAP00000001299 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18209755-18211148(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16H6.7
Entrez Gene 184594 Entrez gene
SwissProt Q9XV94 EMBL-EBI
WormBase CE18603 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04125 Hypothetical protein F16H6.7 [Caenorhabditis elegans] ref|NP_507562.1| F16H6.7 [Caenorhabditis elegans] 1.0E-121
blast CAB04916 Hypothetical protein W04E12.7 [Caenorhabditis elegans] ref|NP_507823.2| W04E12.7 [Caenorhabditis elegans] 2.0E-69
blast CAB04131 Hypothetical protein F16H6.5 [Caenorhabditis elegans] ref|NP_507560.1| F16H6.5 [Caenorhabditis elegans] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 7.3E-117
Sequence
Target Sequence 
>C. ELEGANS:179398_AT
gatatgtgattacaaaccctcacgatgttgtaaccgtctttgatggaagcccagcagtta
ttgtttttgatgaattggtgaagtctgatacatccaagtatctctcgttcaaaatggagc
aatcatatggaaaagtagacgaaattgcggcaaagatggttactgaagaaattcatttca
caattcatctgtgttctcattcgcagaaaaatgtgatcgaaatcttccaatctgcttatt
ccaatggttatacagaaaaggataaaaagggaaaaattccagaagggggtaaagtcaagt
gtgctggaactgaaactggtgccagaagcaaggtcaattgtgaggaggttgccaaggagg
tcaatgaacgtatcgattcggccaaggacaagtttggagagttttgggaaagcggagagg
tgagccctagggtaggggtactaaatctcgacggctacacctatttcagttttatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGTGATTACAAACCCTCACGA 628 425 65 Antisense
AACCCTCACGATGTTGTAACCGTCT 225 141 79 Antisense
TGTAACCGTCTTTGATGGAAGCCCA 102 555 93 Antisense
TGAATTGGTGAAGTCTGATACATCC 210 577 135 Antisense
TACATCCAAGTATCTCTCGTTCAAA 269 645 153 Antisense
ACAATTCATCTGTGTTCTCATTCGC 322 115 244 Antisense
GGTCAATGAACGTATCGATTCGGCC 654 501 423 Antisense
GTATCGATTCGGCCAAGGACAAGTT 303 447 434 Antisense
AGCGGAGAGGTGAGCCCTAGGGTAG 292 75 475 Antisense
GTAGGGGTACTAAATCTCGACGGCT 8 319 496 Antisense
GGCTACACCTATTTCAGTTTTATGA 90 539 517 Antisense
Sequence Source Affymetrix Proprietary Database