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[179397_at] Protein phosphatase

Description F44B9.9 /REP_DB=WormBase Gene ID /WP=CE00178 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase
Cluster 6grp_total > 71      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.5
(-0.6)
A 		5.6
(-2.6)
A 		4.5
(-3)
A 		19.8
(3)
A 		15
B 10.7
(1.8)
A 		6.9
(-0.6)
A 		3.2
(-3)
A 		12.5
(3)
A 		9
C 4
(-2.3)
A 		3.9
(-2.4)
A 		2.4
(-3)
A 		16.7
(3)
A 		14
avr 8.4
(-0.7) 		5.5
(-2) 		3.4
(-3) 		16.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 7.4
(-2.7)
A 		11.2
(-1.6)
A 		10.7
(-1.7)
A 		26.6
(3)
A 		6.4
(-3)
A 		13
(-1)
A 		20
B 7.1
(-3)
A 		12.1
(-2)
A 		23.2
(0.3)
A 		30.3
(1.8)
A 		36.1
(3)
A 		9.3
(-2.5)
A 		29
C 4.5
(-3)
A 		13
(-1.7)
A 		45
(3)
A 		32.4
(1.1)
A 		4.9
(-2.9)
A 		9.3
(-2.3)
A 		41
avr 6.3
(-3) 		12.1
(-1.5) 		26.3
(2.1) 		29.8
(3) 		15.8
(-0.6) 		10.5
(-1.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.8
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		2.9
(0.9)
A 		3
B 3.4
(3)
A 		1.7
(-0.8)
A 		0.7
(-3)
A 		2.7
(1.4)
A 		3
C 1.3
(-1.5)
A 		1.1
(-2.1)
A 		0.8
(-3)
A 		2.8
(3)
A 		2
avr 2.8
(3) 		1.3
(-1.7) 		0.9
(-3) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(-3)
A 		4
(-0.1)
A 		2.3
(-2)
A 		6.7
(3)
A 		1.9
(-2.4)
A 		3.2
(-1)
A 		5
B 2.5
(-3)
A 		4
(-2.3)
A 		5.6
(-1.5)
A 		8
(-0.3)
A 		14.7
(3)
A 		3.5
(-2.5)
A 		12
C 1.7
(-2.9)
A 		4
(-1.5)
A 		11.5
(3)
A 		6.5
(-0)
A 		1.6
(-3)
A 		3.1
(-2.1)
A 		10
avr 1.9
(-3) 		4
(-0.6) 		6.5
(2.3) 		7.1
(3) 		6.1
(1.8) 		3.3
(-1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7327
Sequence Type Exemplar sequence
Representative Public ID F44B9.9 NCBI
Target Description F44B9.9 /REP_DB=WormBase Gene ID /WP=CE00178 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066350 NCBI Caenorhabditis elegans F44B9.9 (F44B9.9) mRNA, complete cds. 11/11 None
SNAP00000005271 ENSEMBL cdna:SNAP chromosome:CEL140:III:8029802:8030986:-1 10/11 None
GENEFINDER00000005276 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8029828:8030986:-1 11/11 None
F44B9.9 ENSEMBL cdna:known chromosome:CEL140:III:8029828:8030986:-1 gene:F44B9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8029825-8030984(-) 100.0 100.0
Public Domain and Genome References
Gene Title Protein phosphatase
Ensembl F44B9.9
Entrez Gene 185726 Entrez gene
SwissProt P34430 EMBL-EBI
WormBase CE29045 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28027 Hypothetical protein F44B9.9 [Caenorhabditis elegans] ref|NP_498751.1| F44B9.9 [Caenorhabditis elegans] sp|P34430|YL39_CAEEL Hypothetical protein F44B9.9 in chromosome III 1.0E-139
blast AAA28027 Hypothetical protein F44B9.9 [Caenorhabditis elegans] ref|NP_498751.1| F44B9.9 [Caenorhabditis elegans] sp|P34430|YL39_CAEEL Hypothetical protein F44B9.9 in chromosome III 1.0E-118
blast S44808 F44B9.9 protein - Caenorhabditis elegans 1.0E-102
blast S44808 F44B9.9 protein - Caenorhabditis elegans 1.0E-100
blast S44808 F44B9.9 protein - Caenorhabditis elegans 5.0E-70
blast AAA28027 Hypothetical protein F44B9.9 [Caenorhabditis elegans] ref|NP_498751.1| F44B9.9 [Caenorhabditis elegans] sp|P34430|YL39_CAEEL Hypothetical protein F44B9.9 in chromosome III 4.0E-67
blast NP_871869 F26B1.5b [Caenorhabditis elegans] gb|AAO12450.1| Hypothetical protein F26B1.5b [Caenorhabditis elegans] 2.0E-38
blast NP_871869 F26B1.5b [Caenorhabditis elegans] gb|AAO12450.1| Hypothetical protein F26B1.5b [Caenorhabditis elegans] 5.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 0.0024
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-17
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.7E-9
Sequence
Target Sequence 
>C. ELEGANS:179397_AT
aaacactcgcagaaatttctccgcctgtgacaattgttggagatattcacggacaattcg
aagatctcgtgagattgttgaatactcgaaattcttcagaaaatgccaagagtaagccga
tctatggattttccacgaaaaaatatgctttcccaaacaatacattcttttgcgaggaaa
tcacgaaacacgggcaatcaatttcagatatggatttagatccagcaaagccaagcttca
ttcgtaacaataagcgtggactttcagtatgtttcaatgaagccgctgtaaacgaaacct
gccgtcttttgaatatttcattgatagttagaggacatcagatgatgccagctgggttca
agtttttcgcggatcgaaagctttgtacaatcttctcagctcctagatacatgaatgaaa
tcgataacagcggtgccgtcatgaaagtggcgtcaaacgggaaaataagcatttcaatca
tgaaaaatccaaactttgcaatgaaaatgttcctcctccagatgaagtcacacaattccc
tggatcatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACACTCGCAGAAATTTCTCCGCC 393 129 83 Antisense
ATTTCTCCGCCTGTGACAATTGTTG 458 13 97 Antisense
GTAAGCCGATCTATGGATTTTCCAC 173 463 194 Antisense
AAAGCCAAGCTTCATTCGTAACAAT 323 125 309 Antisense
GAAGCCGCTGTAAACGAAACCTGCC 251 343 361 Antisense
GAAACCTGCCGTCTTTTGAATATTT 141 359 376 Antisense
GCCAGCTGGGTTCAAGTTTTTCGCG 186 279 429 Antisense
TACAATCTTCTCAGCTCCTAGATAC 18 643 468 Antisense
AAATCGATAACAGCGGTGCCGTCAT 138 119 500 Antisense
TTCCTCCTCCAGATGAAGTCACACA 4 701 592 Antisense
GTCACACAATTCCCTGGATCATCGG 268 465 609 Antisense
Sequence Source Affymetrix Proprietary Database