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[179396_at]

Description C35A5.6 /REP_DB=WormBase Gene ID /WP=CE05364 /TR=Q18474 /GB=CAA94908.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1079
1 2 3 4 range
A 402.8
(-2.2)
P 		413.6
(-2.1)
P 		271
(-3)
P 		1219
(3)
P 		948
B 435.8
(-2.7)
P 		420
(-2.8)
P 		389.1
(-3)
P 		1349.8
(3)
P 		961
C 490.3
(-1.9)
P 		353.4
(-2.8)
P 		321.2
(-3)
P 		1225.2
(3)
P 		904
avr 443
(-2.3) 		395.7
(-2.6) 		327.1
(-3) 		1264.7
(3) 		938

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 508.8
(0.1)
P 		428.5
(-1.4)
P 		480.1
(-0.4)
P 		340
(-3)
P 		348.6
(-2.8)
P 		661.9
(3)
P 		322
B 446.9
(-1)
P 		450.2
(-0.9)
P 		384.9
(-2.5)
P 		362.3
(-3)
P 		383.4
(-2.5)
P 		618.1
(3)
P 		256
C 494.2
(-0.2)
P 		424.1
(-1)
P 		258.1
(-3)
P 		354.2
(-1.8)
P 		383.6
(-1.5)
P 		756.3
(3)
P 		498
avr 483.3
(-0.6) 		434.3
(-1.5) 		374.4
(-2.6) 		352.2
(-3) 		371.9
(-2.6) 		678.8
(3) 		327
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 146.6
(1.2)
P 		89.8
(-1.9)
P 		70.9
(-3)
P 		178.4
(3)
P 		108
B 139
(-1.5)
P 		103.7
(-2.6)
P 		90.2
(-3)
P 		287.6
(3)
P 		197
C 162.3
(0.5)
P 		101.6
(-3)
P 		111.9
(-2.4)
P 		206.6
(3)
P 		105
avr 149.3
(-0.4) 		98.4
(-2.7) 		91
(-3) 		224.2
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 93.8
(-2.4)
P 		152.4
(2.3)
P 		104.6
(-1.5)
P 		86.2
(-3)
P 		105.2
(-1.5)
P 		161.2
(3)
P 		75
B 155.5
(-0.3)
P 		149.9
(-0.5)
P 		93.5
(-3)
P 		96
(-2.9)
P 		155.8
(-0.3)
P 		230.5
(3)
P 		137
C 183.2
(0.8)
P 		129.4
(-1)
P 		65.7
(-3)
P 		71.2
(-2.8)
P 		124.1
(-1.1)
P 		253.2
(3)
P 		188
avr 144.2
(-0.3) 		143.9
(-0.3) 		87.9
(-2.8) 		84.5
(-3) 		128.4
(-1) 		215
(3) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11831
Sequence Type Exemplar sequence
Representative Public ID C35A5.6 NCBI
Target Description C35A5.6 /REP_DB=WormBase Gene ID /WP=CE05364 /TR=Q18474 /GB=CAA94908.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073295 NCBI Caenorhabditis elegans C35A5.6 (C35A5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000025052 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10511719:10513033:1 11/11 None
C35A5.6 ENSEMBL cdna:known chromosome:CEL140:V:10511617:10513033:1 gene:C35A5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025028 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10511616-10513033(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35A5.6
Entrez Gene 183224 Entrez gene
SwissProt Q18474 EMBL-EBI
WormBase CE05364 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94908 Hypothetical protein C35A5.6 [Caenorhabditis elegans] ref|NP_505696.1| C35A5.6 [Caenorhabditis elegans] 1.0E-146
blast CAA94908 Hypothetical protein C35A5.6 [Caenorhabditis elegans] ref|NP_505696.1| C35A5.6 [Caenorhabditis elegans] 1.0E-124
blast CAE64831 Hypothetical protein CBG09627 [Caenorhabditis briggsae] 2.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505696.1 2 15-34,41-63
C35A5.6 2 15-34,41-63
Sequence
Target Sequence 
>C. ELEGANS:179396_AT
atctgacacagagcaatcctcaatttgtaaaatttgtgcataacatttcccatcttcata
tcaaactaaacacagttgaactcaatgaaaccagattaccaatagttcaaaagtttttga
aagaattaccaaaagcaatgtgtaatgtatcatattcaattccggcattgtttgaaggaa
ctgctgtaatggcaaatactaccctttatggaaaagttaatccaatgtctagcagtgtta
tttcttctgttcatcaaaaaatattctctctacttaataacactgaaattccgtctgttg
atgtgcatgacattttccatccgcgaatgaatattgtagaacttgacaatcgaaaacatg
aggaccttctacaaattatgtcaaaccggacaggagatttcaagttgaatacgggagatt
ttattaaagaaatagtcttgttcaattcaacagaatcagggtcctttcatgaggaaattg
gacgagccgtattggcaccttgctcgaatttcactcttctcagattcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGACACAGAGCAATCCTCAATT 659 33 245 Antisense
GCATAACATTTCCCATCTTCATATC 279 309 282 Antisense
ATGTATCATATTCAATTCCGGCATT 512 47 389 Antisense
AATGGCAAATACTACCCTTTATGGA 608 161 432 Antisense
AGCAGTGTTATTTCTTCTGTTCATC 57 79 475 Antisense
GAAATTCCGTCTGTTGATGTGCATG 320 363 529 Antisense
GATGTGCATGACATTTTCCATCCGC 356 409 544 Antisense
ACAGAATCAGGGTCCTTTCATGAGG 238 109 694 Antisense
ATTGGACGAGCCGTATTGGCACCTT 564 3 721 Antisense
ATTGGCACCTTGCTCGAATTTCACT 278 3 735 Antisense
GAATTTCACTCTTCTCAGATTCAAA 541 325 750 Antisense
Sequence Source Affymetrix Proprietary Database