[Home] | [Total List]

[179395_at]

Description B0462.1 /REP_DB=WormBase Gene ID /WP=CE15554 /TR=O62019 /GB=CAB03810.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 72.8
(-3)
A 		80.9
(-1.6)
A 		74.8
(-2.6)
A 		106.4
(3)
A 		34
B 84.1
(2.5)
A 		87.9
(3)
A 		50.4
(-1.8)
A 		41.5
(-3)
A 		46
C 69.5
(1.3)
A 		81.3
(3)
A 		39.8
(-3)
A 		57.5
(-0.4)
A 		42
avr 75.5
(1.3) 		83.4
(3) 		55
(-3) 		68.5
(-0.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 74.6
(0.3)
A 		68.3
(-0.4)
A 		78.2
(0.6)
A 		102.6
(3)
P 		96.3
(2.4)
A 		41.5
(-3)
A 		61
B 64.5
(-3)
A 		89
(0)
A 		87.2
(-0.2)
A 		113.4
(3)
M 		74.7
(-1.7)
A 		82.8
(-0.8)
A 		49
C 63.3
(-1)
A 		105.2
(3)
A 		44.9
(-2.7)
A 		90.3
(1.6)
A 		54.4
(-1.8)
A 		41.8
(-3)
A 		63
avr 67.5
(-1.4) 		87.5
(1.1) 		70.1
(-1.1) 		102.1
(3) 		75.1
(-0.5) 		55.4
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 26.5
(3)
A 		17.6
(-1.9)
A 		19.5
(-0.9)
A 		15.6
(-3)
A 		11
B 26.8
(3)
A 		21.7
(1.3)
A 		11.7
(-2.1)
A 		8.9
(-3)
A 		18
C 23
(2.8)
A 		23.4
(3)
A 		13.9
(-1.2)
A 		9.7
(-3)
A 		14
avr 25.4
(3) 		20.9
(1.1) 		15
(-1.5) 		11.4
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 13.8
(-1.8)
A 		24.3
(1.5)
A 		17
(-0.8)
A 		26
(2)
P 		29.1
(3)
A 		10.1
(-3)
A 		19
B 22.5
(-2.2)
A 		29.6
(2.2)
A 		21.2
(-3)
A 		30
(2.4)
M 		30.4
(2.7)
A 		30.9
(3)
A 		10
C 23.5
(0.5)
A 		32.1
(3)
A 		11.4
(-3)
A 		18.2
(-1)
A 		17.6
(-1.2)
A 		14
(-2.2)
A 		21
avr 19.9
(-1.3) 		28.7
(3) 		16.5
(-3) 		24.7
(1) 		25.7
(1.5) 		18.3
(-2.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14772
Sequence Type Exemplar sequence
Representative Public ID B0462.1 NCBI
Target Description B0462.1 /REP_DB=WormBase Gene ID /WP=CE15554 /TR=O62019 /GB=CAB03810.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075187 NCBI Caenorhabditis elegans B0462.1 (B0462.1) mRNA, complete cds. 11/11 None
GENEFINDER00000015785 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18327609:18331365:1 11/11 None
B0462.1 ENSEMBL cdna:known chromosome:CEL140:V:18327596:18331365:1 gene:B0462.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18327608-18331365(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0462.1
Entrez Gene 180196 Entrez gene
SwissProt O62019 EMBL-EBI
WormBase CE15554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03810 Hypothetical protein B0462.1 [Caenorhabditis elegans] ref|NP_507588.1| B0462.1 [Caenorhabditis elegans] 0.0
blast CAB03810 Hypothetical protein B0462.1 [Caenorhabditis elegans] ref|NP_507588.1| B0462.1 [Caenorhabditis elegans] 1.0E-162
blast CAA20945 Hypothetical protein Y102A5C.4 [Caenorhabditis elegans] ref|NP_507278.1| Y102A5C.4 [Caenorhabditis elegans] 5.0E-77
blast AAF60895 Hypothetical protein Y94H6A.2 [Caenorhabditis elegans] ref|NP_500249.1| Y94H6A.2 [Caenorhabditis elegans] 9.0E-32
blast CAA20945 Hypothetical protein Y102A5C.4 [Caenorhabditis elegans] ref|NP_507278.1| Y102A5C.4 [Caenorhabditis elegans] 5.0E-31
blast CAE68041 Hypothetical protein CBG13658 [Caenorhabditis briggsae] 8.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:179395_AT
acgtcttctacattgtcgtctttgattgcaaaagttttttcaccaaacttttttcccctt
atgcttatgtgatcagctgtgattccaatagtgggaatgtgttgaagtccattgatcgtg
gtgaatgtcacgtttggatctaccgaagcgtcggacttaacacctatgaaaattatacga
cccgaatgatagattttatgagaacttttgagcccagctctcaaatcctacaaacttgga
ttcaaaaaaattgcaatacatcgccttttgacgcagcaagagatatccagttaatactgg
gaattcattgtgatttcgttggaatggttcatatgaagcggcgcccgtgggttgaaattg
caaacagcgagcatcgattggggccaggacgagacattatggacctccttgtctattaca
atttattgtttccgttatttaaaaatgacaacttttttcaagtgaaaacaaatttctctt
ggttgccggaattcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTCTTCTACATTGTCGTCTTTGA 394 95 1130 Antisense
CTTTTTTCCCCTTATGCTTATGTGA 302 223 1177 Antisense
ATGTCACGTTTGGATCTACCGAAGC 407 47 1254 Antisense
GAAGCGTCGGACTTAACACCTATGA 704 341 1274 Antisense
ATGAGAACTTTTGAGCCCAGCTCTC 249 45 1327 Antisense
CCAGCTCTCAAATCCTACAAACTTG 548 271 1343 Antisense
TGCAATACATCGCCTTTTGACGCAG 641 575 1381 Antisense
TTCATATGAAGCGGCGCCCGTGGGT 168 687 1457 Antisense
ACAGCGAGCATCGATTGGGGCCAGG 382 107 1493 Antisense
GACGAGACATTATGGACCTCCTTGT 239 377 1517 Antisense
ATTTCTCTTGGTTGCCGGAATTCAT 166 17 1601 Antisense
Sequence Source Affymetrix Proprietary Database