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[179394_at]

Description T03E6.2 /REP_DB=WormBase Gene ID /WP=CE16329 /TR=O45736 /GB=CAB07277.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 2.6
(-3)
A 		26.2
(0.4)
A 		44.1
(3)
A 		11.4
(-1.7)
A 		42
B 6.5
(-3)
A 		22.7
(3)
A 		15
(0.1)
A 		16.6
(0.7)
A 		16
C 41.5
(1.8)
A 		47.1
(3)
A 		19.1
(-3)
A 		40.4
(1.6)
A 		28
avr 16.9
(-3) 		32
(3) 		26.1
(0.7) 		22.8
(-0.7) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 2.5
(-3)
A 		14.6
(-1.5)
A 		33.6
(0.9)
A 		39.7
(1.7)
A 		49.9
(3)
A 		2.8
(-3)
A 		47
B 19.7
(1.2)
A 		7.6
(-2.6)
A 		10.2
(-1.8)
A 		7.8
(-2.5)
A 		6.2
(-3)
A 		25.5
(3)
A 		19
C 22.7
(3)
A 		9
(-2.3)
A 		7.3
(-3)
A 		12.4
(-1)
A 		8.3
(-2.6)
A 		16.5
(0.6)
A 		15
avr 15
(-0.5) 		10.4
(-3) 		17
(0.6) 		20
(2.2) 		21.5
(3) 		14.9
(-0.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.9
(-3)
A 		5.7
(-0.3)
A 		11.5
(3)
A 		1.7
(-2.5)
A 		11
B 2.1
(-3)
A 		5.6
(3)
A 		3.5
(-0.6)
A 		3.5
(-0.6)
A 		4
C 13.7
(3)
A 		13.5
(2.8)
A 		6.7
(-3)
A 		6.8
(-2.9)
A 		7
avr 5.6
(-0.8) 		8.3
(3) 		7.2
(1.5) 		4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.5
(-3)
A 		5.2
(-1.1)
A 		7.3
(-0.2)
A 		10.1
(1)
A 		15
(3)
A 		0.7
(-2.9)
A 		15
B 6.9
(0.9)
A 		2.5
(-2.7)
A 		2.5
(-2.7)
A 		2.1
(-3)
A 		2.5
(-2.7)
A 		9.5
(3)
A 		7
C 8.4
(3)
A 		2.8
(-2.2)
A 		1.9
(-3)
A 		2.5
(-2.4)
A 		2.7
(-2.3)
A 		5.5
(0.3)
A 		7
avr 5.3
(0.4) 		3.5
(-3) 		3.9
(-2.3) 		4.9
(-0.4) 		6.7
(3) 		5.2
(0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13252
Sequence Type Exemplar sequence
Representative Public ID T03E6.2 NCBI
Target Description T03E6.2 /REP_DB=WormBase Gene ID /WP=CE16329 /TR=O45736 /GB=CAB07277.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074794 NCBI Caenorhabditis elegans T03E6.2 (T03E6.2) mRNA, complete cds. 11/11 None
T03E6.2 ENSEMBL cdna:known chromosome:CEL140:V:16583619:16585757:-1 gene:T03E6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008705 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16583618-16585757(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T03E6.2
Entrez Gene 188015 Entrez gene
SwissProt O45736 EMBL-EBI
WormBase CE16329 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07277 Hypothetical protein T03E6.2 [Caenorhabditis elegans] ref|NP_507195.1| T03E6.2 [Caenorhabditis elegans] 1.0E-102
blast CAA90674 Hypothetical protein T22H6.3 [Caenorhabditis elegans] ref|NP_510134.1| Seven TM Receptor family member (str-124) [Caenorhabditis elegans] 3.0E-25
blast CAB04681 Hypothetical protein T05E12.1 [Caenorhabditis elegans] ref|NP_507323.2| Seven TM Receptor family member (str-125) [Caenorhabditis elegans] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.4E-19
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.8E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507195.1 5 4-26,38-60,83-105,131-153,163-181
T03E6.2 5 4-26,38-60,83-105,131-153,163-181
Sequence
Target Sequence 
>C. ELEGANS:179394_AT
gtatgctggttttatctcatcgcaggttatcaattgtctacttttgtacctgcttcttgc
cagggcgcataagatttttggccgctatcggataatgatgatatcattctcaattgtgat
tatgctttactcgctgaccgagatttgtcggactatgcttgtcagtaatcaaaaatgttt
ccagtcccaaaaccccgtcaatagagaagagcaatggaattggtcgcaagtatttggcct
ggcaatttgttgtataatcatgggattgtgcttctcgacaatatcattatatctcaaccg
ccagctattcctgacactttctcttcaggttttctttttttttttcaatttttctaatcg
aaaatgtttccagaccctgatcccagtggtaacaatgtacttcccggtgggcagtctgat
agtcttcccattttttggaatcgatttgggattgtacgcaaacaatctcggagcatttgt
tggagtttatcctgctttggatccattgtttgcaatatttctgatcaaagactttcgcca
ttttgttttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGCTGGTTTTATCTCATCGCAG 622 455 30 Antisense
GGCGCATAAGATTTTTGGCCGCTAT 313 541 93 Antisense
GTGATTATGCTTTACTCGCTGACCG 540 483 145 Antisense
TGGTCGCAAGTATTTGGCCTGGCAA 115 551 250 Antisense
TAATCATGGGATTGTGCTTCTCGAC 641 633 284 Antisense
ATATCATTATATCTCAACCGCCAGC 41 21 310 Antisense
TGACACTTTCTCTTCAGGTTTTCTT 318 571 341 Antisense
TAACAATGTACTTCCCGGTGGGCAG 55 637 419 Antisense
GGGCAGTCTGATAGTCTTCCCATTT 305 493 438 Antisense
GGAGTTTATCCTGCTTTGGATCCAT 261 517 511 Antisense
AAGACTTTCGCCATTTTGTTTTGTG 29 153 557 Antisense
Sequence Source Affymetrix Proprietary Database