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[179392_s_at]

Description T26E3.4 /REP_DB=WormBase Gene ID /WP=CE24015 /TR=O18131 /GB=CAB04837.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 61      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 72      6grp_total > 60      4grp_total > 10      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1289
1 2 3 4 range
A 499
(-3)
P 		636.7
(-2.2)
P 		561.9
(-2.6)
P 		1563.7
(3)
P 		1065
B 598.4
(-3)
P 		658.6
(-2.7)
P 		640.9
(-2.8)
P 		1787.7
(3)
P 		1189
C 662.7
(-3)
P 		778.5
(-2.4)
P 		707.7
(-2.8)
P 		1749.6
(3)
P 		1087
avr 586.7
(-3) 		691.3
(-2.4) 		636.8
(-2.7) 		1700.3
(3) 		1114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 301.2
(-3)
P 		471.5
(0.6)
P 		487.8
(0.9)
P 		585.7
(3)
P 		354.9
(-1.9)
P 		385.2
(-1.2)
P 		285
B 406.3
(-2.3)
P 		483.1
(0.6)
P 		545.8
(3)
P 		482
(0.6)
P 		389
(-3)
P 		442.7
(-0.9)
P 		157
C 551.6
(3)
P 		399.8
(-1.6)
P 		353.4
(-3)
P 		396.4
(-1.7)
P 		429.4
(-0.7)
P 		413.4
(-1.2)
P 		198
avr 419.7
(-1.2) 		451.5
(0.7) 		462.3
(1.4) 		488
(3) 		391.1
(-3) 		413.8
(-1.6) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 181.7
(-0.1)
P 		138.2
(-3)
P 		146.9
(-2.4)
P 		228.9
(3)
P 		91
B 190.8
(-1.9)
P 		162.7
(-2.6)
P 		148.5
(-3)
P 		381
(3)
P 		233
C 219.4
(-3)
P 		223.8
(-2.7)
P 		246.7
(-0.8)
P 		295
(3)
P 		76
avr 197.3
(-1.9) 		174.9
(-3) 		180.7
(-2.7) 		301.6
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 55.5
(-3)
P 		167.7
(3)
P 		106.2
(-0.3)
P 		148.5
(2)
P 		107.1
(-0.2)
P 		93.8
(-1)
P 		112
B 141.4
(-0.8)
P 		160.8
(2.3)
P 		132.5
(-2.2)
P 		127.7
(-3)
P 		158
(1.9)
P 		165.1
(3)
P 		37
C 204.4
(3)
P 		122
(-1)
P 		90
(-2.5)
P 		79.7
(-3)
P 		139
(-0.1)
P 		138.4
(-0.2)
P 		125
avr 133.8
(0.6) 		150.2
(3) 		109.6
(-3) 		118.6
(-1.7) 		134.7
(0.7) 		132.4
(0.4) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179392_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2043
Sequence Type Exemplar sequence
Representative Public ID T26E3.4 NCBI
Target Description T26E3.4 /REP_DB=WormBase Gene ID /WP=CE24015 /TR=O18131 /GB=CAB04837.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060806 NCBI Caenorhabditis elegans T26E3.4 (T26E3.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000034760 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12672387:12676855:1 11/11 None
SNAP00000034748 ENSEMBL cdna:SNAP chromosome:CEL140:I:12673241:12682166:1 11/11 None
T26E3.4 ENSEMBL cdna:known chromosome:CEL140:I:12673236:12676949:1 gene:T26E3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12673171-12676786(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E3.4
Entrez Gene 173136 Entrez gene
SwissProt O18131 EMBL-EBI
WormBase CE24015 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256173_AT RWD domain-containing protein at
CANINE:1603638_AT similar to small androgen receptor-interacting protein cfa
CANINE_2:CFA.13092.1.S1_S_AT similar to small androgen receptor-interacting protein cfa
DROSGENOME1:153757_AT dm
DROSOPHILA_2:1634168_S_AT dm
CHICKEN:GGAAFFX.12766.1.S1_AT RWD domain containing 1 gga
CHICKEN:GGAAFFX.9501.1.S1_AT RWD domain containing 1 gga
HG-U133_PLUS_2:219598_S_AT RWD domain containing 1 hs
HG-U133A:219598_S_AT RWD domain containing 1 hs
HG-U133A_2:219598_S_AT RWD domain containing 1 hs
HU35KSUBA:RC_AA460444_AT RWD domain containing 1 hs
U133_X3P:G7706668_3P_S_AT RWD domain containing 1 hs
HG-U95C:63839_AT RWD domain containing 1 hs
MOE430B:1454241_AT RWD domain containing 1 mm
MOUSE430_2:1454241_AT RWD domain containing 1 mm
MG-U74AV2:160299_AT RWD domain containing 1 mm
MOE430A:1427913_AT RWD domain containing 1 mm
MOUSE430A_2:1427913_AT RWD domain containing 1 mm
MOUSE430_2:1427913_AT RWD domain containing 1 mm
MOE430B:1430242_AT RWD domain containing 1 mm
MOUSE430_2:1430242_AT RWD domain containing 1 mm
MU19KSUBC:TC35416_S_AT RWD domain containing 1 (Rwdd1), mRNA mm
YEAST_2:1777979_AT Highly-acidic cytoplasmic RWD domain-containing protein of unknown function, sensitive to proteolysis, N-terminal region has high content of acidic amino acid residues, putative IUP (intrinsically unstructured protein) Sc
Protein Similarities
Method ID Description E-Value
blast CAB61018 Hypothetical protein T26E3.3 [Caenorhabditis elegans] ref|NP_493208.1| abnormal embryonic PARtitioning of cytoplasm family member (par-6) [Caenorhabditis elegans] sp|Q9NAN2|PAR6_CAEEL Partitioning defective 6 protein gb|AAD15926.1| PAR-6 [Caenorhabditis elegans] 1.0E-172
blast T25297 hypothetical protein T26E3.3 - Caenorhabditis elegans 1.0E-166
blast CAE64104 Hypothetical protein CBG08713 [Caenorhabditis briggsae] 1.0E-151
blast CAB04837 Hypothetical protein T26E3.4 [Caenorhabditis elegans] ref|NP_493207.1| T26E3.4 [Caenorhabditis elegans] 2.0E-95
blast CAB04837 Hypothetical protein T26E3.4 [Caenorhabditis elegans] ref|NP_493207.1| T26E3.4 [Caenorhabditis elegans] 4.0E-95
blast CAE64105 Hypothetical protein CBG08714 [Caenorhabditis briggsae] 1.0E-82
blast CAE64105 Hypothetical protein CBG08714 [Caenorhabditis briggsae] 2.0E-82
blast XP_393179 PREDICTED: similar to ENSANGP00000020330 [Apis mellifera] 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR006575 EMBL-EBI RWD 1.9E-33
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.4E-7
Pfam IPR000270 EMBL-EBI Octicosapeptide/Phox/Bem1p 1.2E-16
Pfam IPR006575 EMBL-EBI RWD 1.9E-33
Sequence
Target Sequence 
>C. ELEGANS:179392_S_AT
gaactatcgattcagctcaagtcaaatcagtacgaagacccaacggacgacgatttcgac
gtggaattaggcatcgaatttaccgaaaattatccagatgagattccaataataactctg
aatggaattgaagatgcattcacagccgaacgaatcgccgaatcaatcgataaattacgt
tctgttgccgaagaaaatctcggaatggttatggtttttgcaattgtttcagcacttcaa
gatgaaattggagagcttgttgatgtgaaaaaacgtgcaaaagaggaaaaagtcgaaatt
gagaaagagaaaaaagaagccgagagccgcaagaaatttgagggtactgtagtgacaccg
gacacattccgagcctggaaggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTATCGATTCAGCTCAAGTCAA 501 349 112 Antisense
ACGACGATTTCGACGTGGAATTAGG 570 87 158 Antisense
GGAATTAGGCATCGAATTTACCGAA 499 533 174 Antisense
GAAGATGCATTCACAGCCGAACGAA 271 339 241 Antisense
CCGAACGAATCGCCGAATCAATCGA 301 263 257 Antisense
GATAAATTACGTTCTGTTGCCGAAG 514 423 280 Antisense
ATCTCGGAATGGTTATGGTTTTTGC 364 9 308 Antisense
GAAAAAAGAAGCCGAGAGCCGCAAG 552 353 420 Antisense
TGAGGGTACTGTAGTGACACCGGAC 312 567 450 Antisense
TAGTGACACCGGACACATTCCGAGC 626 653 461 Antisense
GACACATTCCGAGCCTGGAAGGACA 38 367 472 Antisense
Sequence Source Affymetrix Proprietary Database