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[179391_at]

Description ZK265.3 /REP_DB=WormBase Gene ID /WP=CE15293 /TR=Q94401 /GB=CAB03515.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 15.8
(-3)
A 		39.5
(0.5)
A 		56.6
(3)
A 		29.4
(-1)
A 		41
B 3.5
(-3)
A 		36.7
(1.2)
A 		50.6
(3)
A 		23.6
(-0.4)
A 		47
C 5.1
(-3)
A 		17.6
(-2)
A 		19.8
(-1.9)
A 		82.6
(3)
A 		78
avr 8.1
(-3) 		31.3
(0.8) 		42.3
(2.5) 		45.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 30.9
(-2.9)
A 		24.1
(-3)
A 		29.5
(-2.9)
A 		45.4
(-2.5)
A 		179.8
(0.4)
A 		297.1
(3)
P 		273
B 34.1
(-2.8)
A 		28.8
(-3)
A 		52.1
(-2.3)
A 		31.9
(-2.9)
A 		185.9
(1.5)
P 		237.8
(3)
P 		209
C 34.4
(-2.5)
A 		12.2
(-3)
A 		33.6
(-2.5)
A 		46
(-2.2)
A 		153
(0.4)
A 		264.2
(3)
P 		252
avr 33.1
(-2.7) 		21.7
(-3) 		38.4
(-2.6) 		41.1
(-2.5) 		172.9
(0.7) 		266.4
(3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5.7
(-2.2)
A 		8.6
(-0.5)
A 		14.8
(3)
A 		4.3
(-3)
A 		11
B 1.1
(-3)
A 		9.1
(1.5)
A 		11.7
(3)
A 		5
(-0.8)
A 		11
C 1.7
(-3)
A 		5.1
(-1.3)
A 		6.9
(-0.4)
A 		13.9
(3)
A 		12
avr 2.8
(-3) 		7.6
(0.5) 		11.1
(3) 		7.7
(0.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 5.7
(-3)
A 		8.6
(-2.7)
A 		6.4
(-2.9)
A 		11.5
(-2.5)
A 		54.2
(1.4)
A 		72.3
(3)
P 		67
B 11.9
(-2.7)
A 		9.6
(-2.9)
A 		12.6
(-2.7)
A 		8.4
(-3)
A 		75.5
(2)
P 		88.7
(3)
P 		80
C 12.8
(-2.4)
A 		3.7
(-3)
A 		8.6
(-2.7)
A 		9.3
(-2.6)
A 		49.5
(0.2)
A 		88.4
(3)
P 		85
avr 10.1
(-2.8) 		7.3
(-3) 		9.2
(-2.8) 		9.7
(-2.8) 		59.7
(1.1) 		83.1
(3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2393
Sequence Type Exemplar sequence
Representative Public ID ZK265.3 NCBI
Target Description ZK265.3 /REP_DB=WormBase Gene ID /WP=CE15293 /TR=Q94401 /GB=CAB03515.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059843 NCBI Caenorhabditis elegans ZK265.3 (ZK265.3) mRNA, complete cds. 11/11 None
SNAP00000032246 ENSEMBL cdna:SNAP chromosome:CEL140:I:8250265:8251631:1 11/11 None
GENEFINDER00000032261 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8250265:8251631:1 11/11 None
ZK265.3 ENSEMBL cdna:known chromosome:CEL140:I:8250265:8251631:1 gene:ZK265.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8250195-8251562(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK265.3
Entrez Gene 191276 Entrez gene
SwissProt Q94401 EMBL-EBI
WormBase CE15293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03515 Hypothetical protein ZK265.3 [Caenorhabditis elegans] ref|NP_492244.1| ZK265.3 [Caenorhabditis elegans] 0.0
blast 2BJQ Chain , Crystal Structure Of The Nematode Sperm Cell Motility Protein Mfp2 1.0E-102
blast AAP94886 MFP2 [Ascaris suum] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:179391_AT
ataccgaagttgctttgttctccaacgctgggaccaccgagaaatacgaaggcggtgcta
ctgccaatttcatgacaatcttccgtaatcttagacctccaccaactggtctcaaggttt
atgatgatctctggtacgatcttcgctacggtgacaacttcccatccaacgctgttccag
ctgatggtcgtgctctcaatacggagacgggaccacatatgcaatatgtggcgctttggt
acaaacacggagacccagtttttggacgttcatatcctagttctgccggaaagaccatgg
ctcattttggaaagaataatcaagagaatgctggtccagaagttggttcaatgcagttgc
tgacagtcccggaggcttcttgtatgggattggaatacaaatggatgcctctttctgagg
gaaaatctagtggatggactactgtacacatcggcaactcggctccatgtattttgaaag
atgataagggtctggaagttctcggaaatttggatttgactattgagaaggcatctgctg
gttatggtggaaaagagaagattatgactggtgcggctgtggccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCGAAGTTGCTTTGTTCTCCAA 587 19 416 Antisense
GGTGCTACTGCCAATTTCATGACAA 393 501 469 Antisense
AATCTTCCGTAATCTTAGACCTCCA 438 137 492 Antisense
TTAGACCTCCACCAACTGGTCTCAA 388 679 506 Antisense
GATGATCTCTGGTACGATCTTCGCT 76 411 538 Antisense
GATCTTCGCTACGGTGACAACTTCC 88 419 553 Antisense
CCATCCAACGCTGTTCCAGCTGATG 431 271 577 Antisense
TGGACGTTCATATCCTAGTTCTGCC 85 549 678 Antisense
CAGTCCCGGAGGCTTCTTGTATGGG 39 187 779 Antisense
GCAACTCGGCTCCATGTATTTTGAA 232 319 869 Antisense
TTATGACTGGTGCGGCTGTGGCCAA 690 675 977 Antisense
Sequence Source Affymetrix Proprietary Database