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[179388_at] G-protein coupled receptor, srh family

Description T19C9.2 /REP_DB=WormBase Gene ID /WP=CE16419 /TR=O45793 /GB=CAB07487.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 13      6grp_cgc > 96      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 5.4
(-2.7)
A 		3.4
(-3)
A 		4.9
(-2.8)
A 		40.9
(3)
A 		38
B 32.7
(3)
A 		9.4
(-1.9)
A 		4.4
(-3)
A 		7
(-2.4)
A 		28
C 18.5
(-0.7)
A 		8.5
(-2.6)
A 		6.1
(-3)
A 		39.1
(3)
A 		33
avr 18.9
(0.5) 		7.1
(-2.5) 		5.1
(-3) 		29
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 13.1
(0.1)
A 		17
(1.6)
A 		5.5
(-2.7)
A 		4.7
(-3)
A 		20.8
(3)
A 		11.5
(-0.5)
A 		16
B 11.9
(-2.1)
A 		15.6
(-1.4)
A 		6.5
(-3)
A 		41
(3)
A 		18.1
(-1)
A 		6.5
(-3)
A 		35
C 4.7
(-2.9)
A 		8
(-2.3)
A 		9.3
(-2.1)
A 		38.3
(3)
A 		3.9
(-3)
A 		5
(-2.8)
A 		34
avr 9.9
(-2.2) 		13.5
(-1.2) 		7.1
(-3) 		28
(3) 		14.3
(-0.9) 		7.7
(-2.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2
(-1.5)
A 		0.7
(-3)
A 		1.3
(-2.3)
A 		6
(3)
A 		5
B 10.4
(3)
A 		2.3
(-2.2)
A 		1
(-3)
A 		1.5
(-2.7)
A 		9
C 6.1
(2.3)
A 		2.4
(-2.6)
A 		2.1
(-3)
A 		6.6
(3)
A 		5
avr 6.2
(3) 		1.8
(-2.6) 		1.5
(-3) 		4.7
(1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.4
(-1.6)
A 		6
(2.6)
A 		1.2
(-3)
A 		1.2
(-3)
A 		6.3
(3)
A 		2.8
(-1.1)
A 		5
B 4.2
(-1.3)
A 		5.2
(-0.7)
A 		1.6
(-3)
A 		10.9
(3)
A 		7.4
(0.7)
A 		2.4
(-2.5)
A 		9
C 1.7
(-2.6)
A 		2.4
(-2)
A 		2.4
(-2)
A 		7.7
(3)
A 		1.3
(-3)
A 		1.7
(-2.6)
A 		6
avr 2.8
(-1.7) 		4.5
(0.4) 		1.7
(-3) 		6.6
(3) 		5
(1) 		2.3
(-2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13213
Sequence Type Exemplar sequence
Representative Public ID T19C9.2 NCBI
Target Description T19C9.2 /REP_DB=WormBase Gene ID /WP=CE16419 /TR=O45793 /GB=CAB07487.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074962 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-112) (srh-112) mRNA, complete cds. 11/11 A 
SNAP00000010312 ENSEMBL cdna:SNAP chromosome:CEL140:V:17227663:17228796:-1 11/11 None
GENEFINDER00000010320 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17227663:17228520:-1 11/11 None
T19C9.2 ENSEMBL cdna:known chromosome:CEL140:V:17227663:17228796:-1 gene:T19C9.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17227662-17228796(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-112
Ensembl T19C9.2
Entrez Gene 188597 Entrez gene
SwissProt O45793 EMBL-EBI
WormBase CE16419 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07487 Hypothetical protein T19C9.2 [Caenorhabditis elegans] ref|NP_507363.1| Serpentine Receptor, class H family member (srh-112) [Caenorhabditis elegans] 0.0
blast CAA16505 Hypothetical protein F08E10.6 [Caenorhabditis elegans] ref|NP_507428.1| Serpentine Receptor, class H family member (srh-111) [Caenorhabditis elegans] 1.0E-177
blast CAB07489 Hypothetical protein T19C9.4 [Caenorhabditis elegans] ref|NP_507361.2| Serpentine Receptor, class H family member (srh-109) [Caenorhabditis elegans] 1.0E-138
blast CAB07487 Hypothetical protein T19C9.2 [Caenorhabditis elegans] ref|NP_507363.1| Serpentine Receptor, class H family member (srh-112) [Caenorhabditis elegans] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.4E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507363.1 7 31-53,66-88,108-130,151-173,193-215,252-274,289-311
T19C9.2 7 31-53,66-88,108-130,151-173,193-215,252-274,289-311
SNAP00000010312 7 31-53,66-88,108-130,151-173,193-215,252-274,289-311
GENEFINDER00000010320 5 15-37,58-80,122-144,160-182,197-219
Sequence
Target Sequence 
>C. ELEGANS:179388_AT
gcatatatcgcaaaacatcccgttttgcttatttcacatattttctcactccgttcatag
cggcatacgttggcatggtcatgattgccgaggaatcagacgctggaaaattacgggctc
tagctatttacccttgccctacacgagagtttttcatatttcctgtttgtgtattcgagg
gcacgacgagccacatttttctagtttatgccttggttatgtcacatacatctggaaaca
ttatatttcatgtcgcatgccttgtatattacttgtatgttgcgcctccacgcactctgt
cacaaactactcgaagagatcagaagatatttttggtctgcgtgacggcacagacttcgg
tgccacttttggttataatcgctccggccatgaccgttttgttggcatcgtgggcgggat
attatcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATATATCGCAAAACATCCCGTTT 699 307 440 Antisense
ACATCCCGTTTTGCTTATTTCACAT 464 103 454 Antisense
TTCTCACTCCGTTCATAGCGGCATA 686 691 482 Antisense
TAGCGGCATACGTTGGCATGGTCAT 198 651 497 Antisense
TTCATGTCGCATGCCTTGTATATTA 269 689 686 Antisense
TATATTACTTGTATGTTGCGCCTCC 66 663 704 Antisense
GCACTCTGTCACAAACTACTCGAAG 476 315 731 Antisense
GATATTTTTGGTCTGCGTGACGGCA 9 427 765 Antisense
TCCGGCCATGACCGTTTTGTTGGCA 25 595 822 Antisense
TGACCGTTTTGTTGGCATCGTGGGC 655 565 830 Antisense
GCATCGTGGGCGGGATATTATCGGC 710 305 844 Antisense
Sequence Source Affymetrix Proprietary Database