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[179387_s_at]

Description F08G2.7 /REP_DB=WormBase Gene ID /WP=CE19779 /TR=Q9XVA2 /GB=CAB04060.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 36      6grp_total > 14      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 205.6
(-3)
P 		268.9
(3)
P 		221.1
(-1.5)
P 		226.5
(-1)
P 		63
B 185.2
(0.3)
P 		215.3
(3)
A 		148.6
(-3)
P 		164.4
(-1.6)
P 		67
C 191.5
(-1)
P 		284.6
(3)
A 		158.4
(-2.4)
P 		144.2
(-3)
A 		140
avr 194.1
(-1.6) 		256.3
(3) 		176
(-3) 		178.4
(-2.8) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 273.7
(3)
P 		181.6
(-0.1)
P 		167
(-0.6)
P 		134.2
(-1.6)
P 		124
(-2)
P 		93.6
(-3)
P 		180
B 225
(3)
P 		216.1
(2.5)
P 		123.7
(-2.6)
P 		205.7
(1.9)
P 		115.8
(-3)
A 		129
(-2.3)
P 		109
C 174.4
(-0)
P 		228.2
(3)
P 		186.2
(0.6)
P 		151.6
(-1.3)
P 		138.7
(-2)
P 		121.8
(-3)
M 		106
avr 224.4
(3) 		208.6
(2.1) 		159
(-0.6) 		163.8
(-0.3) 		126.2
(-2.4) 		114.8
(-3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 74.9
(3)
P 		58.4
(0.6)
P 		57.8
(0.5)
P 		33.2
(-3)
P 		42
B 59.1
(3)
P 		53.2
(1.6)
A 		34.4
(-3)
P 		35
(-2.9)
P 		25
C 63.4
(1.1)
P 		81.8
(3)
A 		55.2
(0.2)
P 		24.3
(-3)
A 		58
avr 65.8
(3) 		64.5
(2.8) 		49.1
(0.1) 		30.8
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 50.5
(1)
P 		64.6
(3)
P 		36.4
(-1)
P 		34
(-1.4)
P 		37.4
(-0.9)
P 		22.8
(-3)
P 		42
B 78.3
(3)
P 		71.9
(2.2)
P 		30
(-3)
P 		54.5
(0)
P 		47.1
(-0.9)
A 		48.1
(-0.8)
P 		48
C 64.6
(2.2)
P 		69.6
(3)
P 		47.4
(-0.4)
P 		30.5
(-3)
P 		44.9
(-0.8)
P 		40.8
(-1.4)
M 		39
avr 64.5
(2.2) 		68.7
(3) 		37.9
(-2.9) 		39.7
(-2.5) 		43.1
(-1.9) 		37.2
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179387_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3991
Sequence Type Exemplar sequence
Representative Public ID F08G2.7 NCBI
Target Description F08G2.7 /REP_DB=WormBase Gene ID /WP=CE19779 /TR=Q9XVA2 /GB=CAB04060.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064502 NCBI Caenorhabditis elegans F08G2.7 (F08G2.7) mRNA, complete cds. 11/11 None
SNAP00000034718 ENSEMBL cdna:SNAP chromosome:CEL140:II:13836293:13838501:-1 11/11 None
GENEFINDER00000034729 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13836293:13841905:-1 11/11 None
F08G2.7 ENSEMBL cdna:known chromosome:CEL140:II:13836201:13841033:-1 gene:F08G2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13836289-13840960(-) 97.15 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G2.7
Entrez Gene 175036 Entrez gene
SwissProt Q9XVA2 EMBL-EBI
WormBase CE19779 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04060 Hypothetical protein F08G2.7 [Caenorhabditis elegans] ref|NP_496903.1| F08G2.7 [Caenorhabditis elegans] 1.0E-156
blast CAB04060 Hypothetical protein F08G2.7 [Caenorhabditis elegans] ref|NP_496903.1| F08G2.7 [Caenorhabditis elegans] 1.0E-110
blast CAE73267 Hypothetical protein CBG20683 [Caenorhabditis briggsae] 2.0E-95
blast CAE73267 Hypothetical protein CBG20683 [Caenorhabditis briggsae] 2.0E-64
Sequence
Target Sequence 
>C. ELEGANS:179387_S_AT
atcccataatgccccagttcggattcccaccggccactccacaattcccgcagatgttcc
agtttcagccgaattctgggggctccgcgcagaggtactctttcatgggggcacctatgc
atccgatttcctcttcgaacactccaacaacgtctggaatggatacgactcatgggggag
ctggcgaatccctagtcccagcaagtgacgtcagctacctggctccacttgttccggctc
cgccaacccttccacttctagaactcaatacatctcaaggcccatcaacttctggaattt
cacagcaaaatccacaacaatcgagctcaagcttcttccatgatgatgatgaagatcagg
atgagacgaagaacttccgtgatgaggaaatcgagtctccaaggtgtcatggctcgacga
gcacactgaaaaatgatgaagaagctgctgagctctcggatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCATAATGCCCCAGTTCGGATT 413 37 782 Antisense
GATGTTCCAGTTTCAGCCGAATTCT 492 409 834 Antisense
CTCCGCGCAGAGGTACTCTTTCATG 176 235 864 Antisense
CTTTCATGGGGGCACCTATGCATCC 608 221 881 Antisense
TGGGGGAGCTGGCGAATCCCTAGTC 613 541 954 Antisense
GTCCCAGCAAGTGACGTCAGCTACC 495 475 976 Antisense
ACCCTTCCACTTCTAGAACTCAATA 372 89 1027 Antisense
TCAATACATCTCAAGGCCCATCAAC 666 633 1046 Antisense
ATCGAGCTCAAGCTTCTTCCATGAT 230 37 1101 Antisense
GAGTCTCCAAGGTGTCATGGCTCGA 520 399 1174 Antisense
AGAAGCTGCTGAGCTCTCGGATTTC 687 73 1221 Antisense
Sequence Source Affymetrix Proprietary Database