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[179386_at]

Description ZK971.1 /REP_DB=WormBase Gene ID /WP=CE02408 /TR=Q20750 /GB=CAA88894.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      6grp_highest_nonorm > 82      6grp_total > 57      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 883
1 2 3 4 range
A 305
(-1.4)
P 		161.5
(-2.7)
A 		129.2
(-3)
A 		775.7
(3)
P 		647
B 426.2
(0.9)
P 		20.1
(-3)
A 		18.7
(-3)
A 		639.2
(3)
P 		621
C 228.9
(-1.6)
P 		21
(-3)
A 		66.1
(-2.7)
A 		901.4
(3)
P 		880
avr 320
(-0.8) 		67.5
(-3) 		71.3
(-3) 		772.1
(3) 		705

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 557.2
(3)
P 		221.6
(-3)
P 		313.7
(-1.4)
P 		328.6
(-1.1)
P 		226.6
(-2.9)
P 		430.1
(0.7)
P 		336
B 343
(-1.6)
P 		490.4
(0.7)
P 		255.6
(-3)
P 		338.8
(-1.7)
P 		502
(0.9)
P 		631.5
(3)
P 		376
C 191.2
(-2.9)
P 		504.9
(2.1)
P 		186.2
(-3)
P 		294.1
(-1.3)
P 		205.1
(-2.7)
P 		562.8
(3)
P 		377
avr 363.8
(-0.7) 		405.6
(0.2) 		251.8
(-3) 		320.5
(-1.6) 		311.2
(-1.8) 		541.5
(3) 		290
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 111.1
(2.8)
P 		35
(-2.9)
A 		33.8
(-3)
A 		113.5
(3)
P 		80
B 135.9
(3)
P 		5
(-3)
A 		4.3
(-3)
A 		136.2
(3)
P 		132
C 75.8
(-0.1)
P 		6
(-3)
A 		23
(-2.3)
A 		152
(3)
P 		146
avr 107.6
(1.7) 		15.3
(-3) 		20.4
(-2.7) 		133.9
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 102.7
(2.7)
P 		78.8
(-1.3)
P 		68.3
(-3)
P 		83.4
(-0.5)
P 		68.4
(-3)
P 		104.7
(3)
P 		36
B 119.4
(-1)
P 		163.2
(0.5)
P 		62.1
(-3)
P 		89.7
(-2)
P 		204
(1.9)
P 		235.5
(3)
P 		173
C 70.9
(-2)
P 		154.1
(1.5)
P 		47.4
(-3)
P 		59.1
(-2.5)
P 		66.4
(-2.2)
P 		188.4
(3)
P 		141
avr 97.7
(-1) 		132
(0.7) 		59.3
(-3) 		77.4
(-2.1) 		112.9
(-0.2) 		176.2
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3488
Sequence Type Exemplar sequence
Representative Public ID ZK971.1 NCBI
Target Description ZK971.1 /REP_DB=WormBase Gene ID /WP=CE02408 /TR=Q20750 /GB=CAA88894.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063812 NCBI Caenorhabditis elegans ZK971.1 (ZK971.1) mRNA, complete cds. 11/11 None
ZK971.1 ENSEMBL cdna:known chromosome:CEL140:II:10278642:10280369:-1 gene:ZK971.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10278638-10280366(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK971.1
Entrez Gene 174592 Entrez gene
SwissProt Q20750 EMBL-EBI
WormBase CE02408 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88894 Hypothetical protein ZK971.1 [Caenorhabditis elegans] emb|CAA88474.1| Hypothetical protein ZK971.1 [Caenorhabditis elegans] ref|NP_496213.1| ZK971.1 [Caenorhabditis elegans] 2.0E-88
blast CAE72916 Hypothetical protein CBG20235 [Caenorhabditis briggsae] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496213.1 1 112-134
ZK971.1 1 112-134
Sequence
Target Sequence 
>C. ELEGANS:179386_AT
ttggcaatgtcacattagcctccgcgcgctcgccctgccttcttgaaaggcttgctgact
cggcgatcaaacttttgggcaacatcatcacacatacgatgaacgcgttcttcaattata
aggatttcctattaattatcacaattactaaccaaatcagcgctgtccaaaagcacttca
agatctttccggtgaacggtgggcttgaatattttccgtgtctgccttctcttttttcaa
agctggtatttcgttttgttgaagaactgctcagctatcagaataaaaattacaaaataa
ttcacactctaattaaaataataattaatgtggttctaatgtttcttctcattgcaatct
gctcatcagtgccggctcctagtcaaacggatctcaagagaatatttagagaaatcgctg
caaacgagaatgcatatggagtgatccaagtggttccatattcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCAATGTCACATTAGCCTCCGC 286 707 38 Antisense
TCGCCCTGCCTTCTTGAAAGGCTTG 417 597 67 Antisense
GCTTGCTGACTCGGCGATCAAACTT 80 305 87 Antisense
TTGGGCAACATCATCACACATACGA 151 709 112 Antisense
TTACTAACCAAATCAGCGCTGTCCA 399 679 182 Antisense
TCAGCGCTGTCCAAAAGCACTTCAA 590 625 194 Antisense
GATCTTTCCGGTGAACGGTGGGCTT 676 415 219 Antisense
AATGTGGTTCTAATGTTTCTTCTCA 449 163 364 Antisense
CATTGCAATCTGCTCATCAGTGCCG 187 215 387 Antisense
TGCCGGCTCCTAGTCAAACGGATCT 2 585 407 Antisense
GTGATCCAAGTGGTTCCATATTCGG 256 483 478 Antisense
Sequence Source Affymetrix Proprietary Database