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[179385_s_at]

Description F14H3.3 /REP_DB=WormBase Gene ID /WP=CE23651 /TR=O45362 /GB=CAB05482.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 14      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 30.1
(2.3)
A 		7.8
(-3)
A 		33
(3)
A 		9.7
(-2.5)
A 		25
B 32.7
(3)
A 		1.7
(-3)
A 		3
(-2.7)
A 		13.3
(-0.8)
A 		31
C 12.6
(-2)
A 		16.2
(-1.7)
A 		0.9
(-3)
A 		70.8
(3)
M 		70
avr 25.1
(1.4) 		8.6
(-3) 		12.3
(-2) 		31.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 31.7
(0)
A 		2.5
(-2.9)
A 		2
(-3)
A 		13.7
(-1.8)
A 		19.2
(-1.2)
A 		60.5
(3)
P 		59
B 16.8
(-2)
A 		8.9
(-3)
A 		24.9
(-0.9)
A 		18.6
(-1.7)
A 		12.4
(-2.5)
P 		55
(3)
P 		46
C 0.7
(-3)
A 		16.3
(-1.3)
A 		25.2
(-0.4)
A 		1.9
(-2.9)
A 		9.8
(-2)
A 		56.9
(3)
P 		56
avr 16.4
(-2.1) 		9.2
(-3) 		17.4
(-2) 		11.4
(-2.7) 		13.8
(-2.4) 		57.5
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11
(3)
A 		1.7
(-2.8)
A 		8.6
(1.5)
A 		1.4
(-3)
A 		10
B 10.4
(3)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		2.8
(-1.6)
A 		10
C 4.2
(-1)
A 		4.7
(-0.7)
A 		0.3
(-3)
A 		11.9
(3)
M 		12
avr 8.5
(3) 		2.3
(-3) 		3.2
(-2.1) 		5.4
(0) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.8
(-0.7)
A 		0.9
(-2.8)
A 		0.4
(-3)
A 		3.5
(-1.7)
A 		5.8
(-0.7)
A 		14.7
(3)
P 		14
B 5.8
(-2)
A 		2.9
(-3)
A 		6
(-1.9)
A 		4.9
(-2.3)
A 		5
(-2.3)
P 		20.5
(3)
P 		18
C 0.3
(-3)
A 		5
(-1.5)
A 		6.4
(-1.1)
A 		0.4
(-3)
A 		3.2
(-2.1)
A 		19.1
(3)
P 		19
avr 4
(-2.6) 		2.9
(-3) 		4.3
(-2.4) 		2.9
(-3) 		4.7
(-2.3) 		18.1
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179385_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13855
Sequence Type Exemplar sequence
Representative Public ID F14H3.3 NCBI
Target Description F14H3.3 /REP_DB=WormBase Gene ID /WP=CE23651 /TR=O45362 /GB=CAB05482.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074636 NCBI Caenorhabditis elegans F14H3.3 (F14H3.3) mRNA, complete cds. 11/11 None
SNAP00000013820 ENSEMBL cdna:SNAP chromosome:CEL140:V:16054679:16056009:-1 11/11 None
GENEFINDER00000013833 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16054679:16055614:-1 11/11 None
F14H3.3 ENSEMBL cdna:known chromosome:CEL140:V:16054546:16056036:-1 gene:F14H3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16054678-16056009(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H3.3
Entrez Gene 180075 Entrez gene
SwissProt O45362 EMBL-EBI
WormBase CE23651 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05482 Hypothetical protein F14H3.3 [Caenorhabditis elegans] ref|NP_507037.1| F14H3.3 [Caenorhabditis elegans] 1.0E-157
blast CAB05482 Hypothetical protein F14H3.3 [Caenorhabditis elegans] ref|NP_507037.1| F14H3.3 [Caenorhabditis elegans] 1.0E-154
blast CAB05482 Hypothetical protein F14H3.3 [Caenorhabditis elegans] ref|NP_507037.1| F14H3.3 [Caenorhabditis elegans] 1.0E-125
blast CAB05486 Hypothetical protein F14H3.4 [Caenorhabditis elegans] ref|NP_507038.1| F14H3.4 [Caenorhabditis elegans] 5.0E-11
blast CAB05486 Hypothetical protein F14H3.4 [Caenorhabditis elegans] ref|NP_507038.1| F14H3.4 [Caenorhabditis elegans] 7.0E-11
blast CAB05486 Hypothetical protein F14H3.4 [Caenorhabditis elegans] ref|NP_507038.1| F14H3.4 [Caenorhabditis elegans] 8.0E-11
Sequence
Target Sequence 
>C. ELEGANS:179385_S_AT
atcaacagcatgaagccaatggcaaattagaagaggagcattttcgagaagagcaagctg
agccaattgaaccagatggagaagatagacaatatgaaaagacgaacaaattcatgaaat
caataagacgtcagaatggaaaggacccgaaagcactttgtaaccgtgcactaagacggt
gtcaaaagatcactgaaagtctgccatttgaacaagagcagtgtatccgaaacattcaag
aatacgaagcaaaagtacaccaacttcaaatggacataagaggccatgaattggtaattc
aacagttaaaatcacaaattatcgaagttggaagaccaaatcgaattttggacgaggaac
tacaagagcgcaagttggatattgaaacttgtcaagaccaggagctacgaatgagcgagt
ttattgaagaggaaaaaaggaatatgacccaatttgatgatgataggaaggagacggaag
atcttatgaatctacttcaaaaggagcttgaacgactcacgacagaggatgagaaagaag
agccaaaagaaatccacaaacgtcgcaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAACAGCATGAAGCCAATGGCAA 556 27 218 Antisense
GAGCAAGCTGAGCCAATTGAACCAG 312 391 268 Antisense
GACCCGAAAGCACTTTGTAACCGTG 388 373 361 Antisense
GTAACCGTGCACTAAGACGGTGTCA 336 461 377 Antisense
AAGATCACTGAAAGTCTGCCATTTG 675 153 403 Antisense
GAAAGTCTGCCATTTGAACAAGAGC 264 361 412 Antisense
GAGCAGTGTATCCGAAACATTCAAG 103 389 433 Antisense
GGACGAGGAACTACAAGAGCGCAAG 576 523 567 Antisense
ACTTGTCAAGACCAGGAGCTACGAA 206 103 604 Antisense
GCTTGAACGACTCACGACAGAGGAT 126 307 723 Antisense
AAGAAATCCACAAACGTCGCAAATA 211 153 764 Antisense
Sequence Source Affymetrix Proprietary Database