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[179384_at]

Description F26F2.3 /REP_DB=WormBase Gene ID /WP=CE19815 /TR=Q9XV56 /GB=CAB04189.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 55      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 6.9
(-3)
A 		9.5
(-2.2)
A 		26
(3)
A 		23.7
(2.3)
A 		19
B 20.4
(3)
A 		4.7
(-2.3)
A 		5.8
(-1.9)
A 		2.7
(-3)
A 		18
C 39.2
(3)
A 		4.1
(-3)
A 		9.8
(-2)
A 		5
(-2.8)
A 		35
avr 22.2
(3) 		6.1
(-3) 		13.9
(-0.1) 		10.5
(-1.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 10.6
(-2.2)
A 		23.9
(-0.5)
A 		50.8
(3)
A 		48.2
(2.7)
A 		4.7
(-3)
A 		20.6
(-0.9)
A 		46
B 11.7
(-1.6)
A 		24.6
(0.6)
A 		32.2
(1.9)
A 		36.2
(2.6)
A 		38.7
(3)
A 		3.7
(-3)
A 		35
C 16.2
(-2.1)
A 		29.9
(-0.7)
A 		67.7
(3)
A 		28.4
(-0.9)
A 		7.2
(-3)
A 		29.9
(-0.7)
A 		61
avr 12.8
(-3) 		26.1
(-0.9) 		50.2
(3) 		37.6
(1) 		16.9
(-2.3) 		18.1
(-2.1) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.5
(-2.5)
A 		2.1
(-3)
A 		6.8
(3)
A 		3.5
(-1.2)
A 		5
B 6.5
(3)
A 		1.2
(-2.4)
A 		1.3
(-2.3)
A 		0.6
(-3)
A 		6
C 13
(3)
A 		1.2
(-2.8)
A 		3.4
(-1.7)
A 		0.8
(-3)
A 		12
avr 7.3
(3) 		1.5
(-3) 		3.8
(-0.6) 		1.6
(-2.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.9
(-2.7)
A 		8.5
(0.9)
A 		11.1
(2.4)
A 		12.2
(3)
A 		1.4
(-3)
A 		5
(-1)
A 		11
B 4.1
(-1.9)
A 		8.2
(-0.1)
A 		7.8
(-0.3)
A 		9.6
(0.4)
A 		15.7
(3)
A 		1.4
(-3)
A 		14
C 6
(-1.5)
A 		9.1
(-0.3)
A 		17.2
(3)
A 		5.7
(-1.6)
A 		2.3
(-3)
A 		10
(0.1)
A 		15
avr 4
(-3) 		8.6
(0.5) 		12
(3) 		9.2
(0.9) 		6.5
(-1.1) 		5.5
(-1.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179384_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12935
Sequence Type Exemplar sequence
Representative Public ID F26F2.3 NCBI
Target Description F26F2.3 /REP_DB=WormBase Gene ID /WP=CE19815 /TR=Q9XV56 /GB=CAB04189.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075567(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075567 NCBI Caenorhabditis elegans F26F2.3 (F26F2.3) mRNA, complete cds. 11/11 None
SNAP00000015789 ENSEMBL cdna:SNAP chromosome:CEL140:V:20563461:20564592:-1 11/11 None
GENEFINDER00000015805 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20563461:20564592:-1 11/11 None
F26F2.3 ENSEMBL cdna:known chromosome:CEL140:V:20563461:20564592:-1 gene:F26F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20563460-20564592(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F2.3
Entrez Gene 184984 Entrez gene
SwissProt Q9XV56 EMBL-EBI
WormBase CE19815 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04189 Hypothetical protein F26F2.3 [Caenorhabditis elegans] ref|NP_507968.1| F26F2.3 [Caenorhabditis elegans] 1.0E-157
Sequence
Target Sequence 
>C. ELEGANS:179384_AT
acagggcatctaccttcgtaatgttgaaacaagcagacattctgaccaaaccagaagctc
aggaagagcacatacagatgaccagcgttattcgttcacaataccatcatactatcctta
ccctaccggagtatgtctgaaaattccatactctgccaaagctaagaatgttcaaatcaa
gatgagaaggagtaaatctcacaactacagagaagctgatatagtgggactcaatacgcc
gaatcaacacattgaagctcgtcgattgagctttgaggagtctcagcgaagactgcaaga
tgaagctagaatagccgagcaaagaagatgggaaaacacgcggagacaaaacgaccaaag
catcagaaatgtttatgggagagaatatgaagctgatagcagaaatagtggtgggcacca
tgaacgaaatgagcagcggagggaaagggaatgcattatggatcgggaaccacgttatac
aaacggattcgatcaaattgaaagaactatgagaaataaccgtgcggcattggaggcaca
acacgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGGGCATCTACCTTCGTAATGTT 567 103 252 Antisense
GGAAGAGCACATACAGATGACCAGC 563 529 313 Antisense
GATGACCAGCGTTATTCGTTCACAA 484 411 328 Antisense
CAATACCATCATACTATCCTTACCC 340 181 350 Antisense
CTATCCTTACCCTACCGGAGTATGT 585 221 363 Antisense
GAAAATTCCATACTCTGCCAAAGCT 223 353 390 Antisense
GTGGGACTCAATACGCCGAATCAAC 352 489 475 Antisense
CAACACATTGAAGCTCGTCGATTGA 67 189 496 Antisense
TCGTCGATTGAGCTTTGAGGAGTCT 155 605 510 Antisense
ATGGATCGGGAACCACGTTATACAA 554 51 709 Antisense
GCGGCATTGGAGGCACAACACGCGG 623 293 775 Antisense
Sequence Source Affymetrix Proprietary Database