[Home] | [Total List]

[179383_at]

Description W06A7.1 /REP_DB=WormBase Gene ID /WP=CE14662 /TR=Q23185 /GB=CAB01520.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.1
(-2.8)
A 		10.4
(2.1)
A 		11.4
(3)
A 		4.9
(-3)
A 		7
B 4.8
(1.6)
A 		5.4
(2.5)
A 		5.7
(3)
A 		1.9
(-3)
A 		4
C 7.6
(1.8)
A 		8.5
(3)
A 		4.3
(-2.6)
A 		4
(-3)
A 		5
avr 5.8
(-0.1) 		8.1
(3) 		7.1
(1.7) 		3.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.9
(0.3)
A 		3.8
(-0.9)
A 		2.2
(-2.5)
A 		3
(-1.7)
A 		7.6
(3)
A 		1.7
(-3)
A 		6
B 6.2
(3)
A 		3
(-1.5)
A 		3.8
(-0.3)
A 		1.9
(-3)
A 		2.4
(-2.3)
A 		3.2
(-1.2)
A 		4
C 5.7
(-0.5)
A 		6.2
(-0.1)
A 		3.6
(-2)
A 		10.7
(3)
A 		2.2
(-2.9)
A 		2.1
(-3)
A 		9
avr 5.6
(3) 		4.3
(0.6) 		3.2
(-1.4) 		5.2
(2.3) 		4.1
(0.3) 		2.3
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.9
(0.1)
A 		2.3
(1.2)
A 		3
(3)
A 		0.7
(-3)
A 		2
B 1.5
(3)
A 		1.3
(1.9)
A 		1.3
(1.9)
A 		0.4
(-3)
A 		1
C 2.5
(3)
A 		2.4
(2.7)
A 		1.5
(-0.3)
A 		0.7
(-3)
A 		2
avr 2
(3) 		2
(3) 		1.9
(2.6) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-1.4)
A 		1.3
(-0.2)
A 		0.5
(-2.7)
A 		0.8
(-1.7)
A 		2.3
(3)
A 		0.4
(-3)
A 		2
B 2.2
(3)
A 		1
(-1.2)
A 		0.9
(-1.6)
A 		0.5
(-3)
A 		1
(-1.2)
A 		1.2
(-0.5)
A 		2
C 2.1
(3)
A 		1.9
(2.1)
A 		0.9
(-2.1)
A 		2.1
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1
avr 1.7
(3) 		1.4
(1) 		0.8
(-3) 		1.1
(-1) 		1.3
(0.3) 		0.8
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14095
Sequence Type Exemplar sequence
Representative Public ID W06A7.1 NCBI
Target Description W06A7.1 /REP_DB=WormBase Gene ID /WP=CE14662 /TR=Q23185 /GB=CAB01520.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) W06A7.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W06A7.1 W06A7.1 /REP_DB=WormBase Gene ID /WP=CE14662 /TR=Q23185 /GB=CAB01520.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14820873-14821532(+) 87.73 100.0
Sequence
Target Sequence 
>C. ELEGANS:179383_AT
aattatcaactatgtctgtcagagagtaaaattggtaaaatttgaacaaaatctattgga
aaacacgttattattatgcacccttggaccacaaagatcttcactaccgtcatgtgtctg
gaacggtgtgactcgggagccggtgatgcataggacggagcactgtcttggaaatactat
cccagaaaagaagcacaagccagaaggaggaatttttgtttggcaattatcttttggttg
tcgtttcttagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATCAACTATGTCTGTCAGAGA 657 175 102 Antisense
AACACGTTATTATTATGCACCCTTG 63 137 163 Antisense
TATTATGCACCCTTGGACCACAAAG 436 663 173 Antisense
GGACCACAAAGATCTTCACTACCGT 494 521 187 Antisense
TTCACTACCGTCATGTGTCTGGAAC 690 685 201 Antisense
TCTGGAACGGTGTGACTCGGGAGCC 80 607 218 Antisense
CTCGGGAGCCGGTGATGCATAGGAC 623 231 233 Antisense
GCATAGGACGGAGCACTGTCTTGGA 12 309 249 Antisense
ACTGTCTTGGAAATACTATCCCAGA 516 95 263 Antisense
GAAGGAGGAATTTTTGTTTGGCAAT 699 331 304 Antisense
ATCTTTTGGTTGTCGTTTCTTAGCT 337 31 330 Antisense
Sequence Source Affymetrix Proprietary Database