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[179382_at]

Description F38C2.4 /REP_DB=WormBase Gene ID /WP=CE16003 /TR=O45490 /GB=CAB05190.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 45      4grp_total > 21      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 73.2
(-1)
P 		55.9
(-3)
A 		63.3
(-2.2)
A 		108.9
(3)
A 		53
B 68.3
(0.9)
P 		83.3
(3)
P 		39.5
(-3)
A 		43
(-2.5)
A 		44
C 106.2
(1.4)
P 		46.2
(-3)
A 		59.6
(-2)
P 		127.4
(3)
P 		81
avr 82.6
(1.4) 		61.8
(-1.8) 		54.1
(-3) 		93.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 64.2
(0.7)
P 		35.8
(-2.7)
P 		83.8
(3)
P 		59.8
(0.1)
A 		33.4
(-3)
A 		41.7
(-2)
A 		50
B 70.7
(0.4)
P 		81.2
(1.7)
P 		92.2
(3)
M 		52.8
(-1.7)
A 		42.1
(-3)
A 		70.8
(0.4)
P 		50
C 44.9
(-0.9)
P 		79.8
(1.8)
P 		43.4
(-1)
A 		28.8
(-2.1)
A 		17.6
(-3)
A 		95.9
(3)
A 		78
avr 59.9
(1.1) 		65.6
(1.9) 		73.1
(3) 		47.1
(-0.7) 		31
(-3) 		69.5
(2.5) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.6
(3)
P 		12.1
(-3)
A 		16.6
(-1.1)
A 		15.9
(-1.4)
A 		15
B 21.8
(3)
P 		20.6
(2.4)
P 		9.2
(-3)
A 		9.2
(-3)
A 		13
C 35.2
(3)
P 		13.3
(-3)
A 		20.8
(-0.9)
P 		21.5
(-0.8)
P 		22
avr 27.9
(3) 		15.3
(-3) 		15.5
(-2.9) 		15.5
(-2.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.8
(-1.8)
P 		12.7
(-1.1)
P 		18.3
(3)
P 		15.2
(0.7)
A 		10.1
(-3)
A 		10.2
(-2.9)
A 		8
B 24.6
(1.9)
P 		27
(3)
P 		22.4
(0.9)
M 		14
(-3)
A 		17.1
(-1.6)
A 		26.4
(2.7)
P 		13
C 16.6
(-0.5)
P 		24.3
(1.2)
P 		11
(-1.8)
A 		5.8
(-3)
A 		5.7
(-3)
A 		32.1
(3)
A 		26
avr 17.7
(0.4) 		21.3
(2.2) 		17.2
(0.1) 		11.7
(-2.6) 		11
(-3) 		22.9
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10167
Sequence Type Exemplar sequence
Representative Public ID F38C2.4 NCBI
Target Description F38C2.4 /REP_DB=WormBase Gene ID /WP=CE16003 /TR=O45490 /GB=CAB05190.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070528 NCBI Caenorhabditis elegans F38C2.4 (F38C2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000039198 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16268833:16273362:1 11/11 None
F38C2.4 ENSEMBL cdna:known chromosome:CEL140:IV:16268833:16273129:1 gene:F38C2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16268838-16273135(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38C2.4
Entrez Gene 185461 Entrez gene
SwissProt O45490 EMBL-EBI
WormBase CE16003 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05190 Hypothetical protein F38C2.4 [Caenorhabditis elegans] ref|NP_502929.1| F38C2.4 [Caenorhabditis elegans] 0.0
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 5.0E-72
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 1.0E-71
blast AAK85471 Hypothetical protein F28A10.5 [Caenorhabditis elegans] ref|NP_493833.1| F28A10.5 [Caenorhabditis elegans] 6.0E-66
blast AAK85471 Hypothetical protein F28A10.5 [Caenorhabditis elegans] ref|NP_493833.1| F28A10.5 [Caenorhabditis elegans] 1.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502929.1 1 112-134
F38C2.4 1 112-134
GENEFINDER00000039198 1 170-192
Sequence
Target Sequence 
>C. ELEGANS:179382_AT
gtgtcgttggctctaaaacttgctttttatctccatgaccaggaaagttacattttaaga
gacaatcttaacaaatctttcagactactatccttgggtcttcatgaccaaattgaatat
gacctgcatatttatgacgtcactgggagaaaatgcaaacttatcggtgcagatattgat
ccacaaaacgctacaacaagagcactctatgaaaaaatgaatggaaaattgtttgttgga
caaatcccaataccgctgtcaattccgtcaattctccgaaaaagtggagcaagtgaagtg
gagctattgaaaattgatatagaaggaggagaatttattgggttggagccattgatcagg
gatttttatgtttgtcagatactcattgaaatccacggatttcctacaatccatcttgcc
ttgctcaaaatcatgtcaaaatacggatttcgtattttcaacgtggaacccaatccgcag
tgctatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCGTTGGCTCTAAAACTTGCTT 238 485 673 Antisense
TTGCTTTTTATCTCCATGACCAGGA 235 703 692 Antisense
AAATCTTTCAGACTACTATCCTTGG 197 117 745 Antisense
ACTACTATCCTTGGGTCTTCATGAC 591 101 756 Antisense
GACCTGCATATTTATGACGTCACTG 655 381 793 Antisense
AAACGCTACAACAAGAGCACTCTAT 288 127 858 Antisense
GGACAAATCCCAATACCGCTGTCAA 255 527 910 Antisense
GTCAGATACTCATTGAAATCCACGG 310 467 1046 Antisense
GGATTTCCTACAATCCATCTTGCCT 38 511 1069 Antisense
CCATCTTGCCTTGCTCAAAATCATG 270 271 1083 Antisense
GAACCCAATCCGCAGTGCTATTTCT 377 347 1138 Antisense
Sequence Source Affymetrix Proprietary Database