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[179381_at]

Description C44H9.7 /REP_DB=WormBase Gene ID /WP=CE05423 /TR=Q18632 /GB=CAA99785.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 30      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 79.8
(3)
P 		46.7
(-0.5)
A 		23.1
(-3)
A 		58.9
(0.8)
A 		57
B 83.2
(3)
M 		56.7
(0.7)
A 		13.8
(-3)
A 		28.5
(-1.7)
A 		69
C 77.7
(1.5)
A 		32.5
(-3)
A 		37.8
(-2.5)
A 		93.1
(3)
A 		61
avr 80.2
(3) 		45.3
(-0.8) 		24.9
(-3) 		60.2
(0.8) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 34.8
(-2.6)
A 		58.2
(-1.6)
A 		41.4
(-2.3)
A 		24
(-3)
A 		102.4
(0.3)
A 		168.5
(3)
P 		145
B 37
(-2.8)
A 		30.4
(-3)
A 		36.2
(-2.8)
A 		39.7
(-2.7)
A 		118.9
(0.2)
P 		195
(3)
P 		165
C 55.7
(-2.1)
A 		64.3
(-1.8)
A 		48.3
(-2.4)
A 		30.4
(-3)
A 		110.8
(-0.1)
P 		197.9
(3)
P 		168
avr 42.5
(-2.6) 		51
(-2.2) 		42
(-2.6) 		31.4
(-3) 		110.7
(0.1) 		187.1
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 29.1
(3)
P 		10.1
(-1.9)
A 		6
(-3)
A 		8.6
(-2.3)
A 		23
B 26.5
(3)
M 		14
(-0.2)
A 		3.2
(-3)
A 		6.1
(-2.3)
A 		23
C 25.7
(3)
A 		9.3
(-3)
A 		13.2
(-1.6)
A 		15.7
(-0.7)
A 		16
avr 27.1
(3) 		11.1
(-1.9) 		7.5
(-3) 		10.1
(-2.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 6.4
(-2.9)
A 		20.7
(-0.5)
A 		9
(-2.5)
A 		6.1
(-3)
A 		30.9
(1.3)
A 		41
(3)
P 		35
B 12.9
(-2.6)
A 		10.1
(-2.9)
A 		8.8
(-3)
A 		10.5
(-2.8)
A 		48.3
(0.7)
P 		72.7
(3)
P 		64
C 20.6
(-1.6)
A 		19.6
(-1.7)
A 		12.3
(-2.4)
A 		6.1
(-3)
A 		35.8
(-0)
P 		66.2
(3)
P 		60
avr 13.3
(-2.3) 		16.8
(-1.9) 		10
(-2.7) 		7.6
(-3) 		38.3
(0.5) 		60
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14150
Sequence Type Exemplar sequence
Representative Public ID C44H9.7 NCBI
Target Description C44H9.7 /REP_DB=WormBase Gene ID /WP=CE05423 /TR=Q18632 /GB=CAA99785.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028537(11), NM_001028536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028537 NCBI Caenorhabditis elegans C44H9.7b (C44H9.7) mRNA, complete cds. 11/11 None
NM_001028536 NCBI Caenorhabditis elegans C44H9.7a (C44H9.7) mRNA, complete cds. 11/11 None
SNAP00000031463 ENSEMBL cdna:SNAP chromosome:CEL140:V:12855604:12857021:-1 10/11 None
GENEFINDER00000031466 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12854899:12856904:-1 10/11 None
C44H9.7b ENSEMBL cdna:known chromosome:CEL140:V:12855604:12857388:-1 gene:C44H9.7 11/11 None
C44H9.7a ENSEMBL cdna:known chromosome:CEL140:V:12855720:12857388:-1 gene:C44H9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12855847-12857388(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44H9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE54888 Hypothetical protein C44H9.7b [Caenorhabditis elegans] ref|NP_001023708.1| C44H9.7b [Caenorhabditis elegans] 0.0
blast CAA99785 Hypothetical protein C44H9.7a [Caenorhabditis elegans] ref|NP_001023707.1| C44H9.7a [Caenorhabditis elegans] 1.0E-159
blast CAE54888 Hypothetical protein C44H9.7b [Caenorhabditis elegans] ref|NP_001023708.1| C44H9.7b [Caenorhabditis elegans] 1.0E-154
blast CAA99785 Hypothetical protein C44H9.7a [Caenorhabditis elegans] ref|NP_001023707.1| C44H9.7a [Caenorhabditis elegans] 1.0E-150
blast CAE54888 Hypothetical protein C44H9.7b [Caenorhabditis elegans] ref|NP_001023708.1| C44H9.7b [Caenorhabditis elegans] 1.0E-150
blast CAE54888 Hypothetical protein C44H9.7b [Caenorhabditis elegans] ref|NP_001023708.1| C44H9.7b [Caenorhabditis elegans] 1.0E-143
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023708.1 1 337-356
C44H9.7b 1 337-356
SNAP00000031463 1 249-268
Sequence
Target Sequence 
>C. ELEGANS:179381_AT
tacagctgtattctcactcagtcacccatctgatcttgtcgcttgcattcgttttccttc
tgatgtgctcaacaactttgccaacatcaccgtccaaccgattccacaaattcctaaact
gcggtttattacaaacaactcgtctggctctcatgagcttttggagcactgtccaaatag
atcccgtacaattacaacttgtttgaataatttccaagatgaagtcacgaacatgaagaa
agcaaaccctaattccgagaagtctcaagcttttgcttcagtttttggtgttgccaaatt
aagagctcgtttggaaatgtttttgagatctgaaaatggaaaaaaatgtggaaacggtat
acaagattttttgaacaatctcgagaagagtgtttcttacaaaaataaagtggcaaaaat
gcaggacgagtctctgtggaaatgcgggtcaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGCTGTATTCTCACTCAGTCAC 584 643 273 Antisense
GTTTTCCTTCTGATGTGCTCAACAA 224 449 323 Antisense
GCTCAACAACTTTGCCAACATCACC 474 301 339 Antisense
TCCAACCGATTCCACAAATTCCTAA 185 587 365 Antisense
ATTACAAACAACTCGTCTGGCTCTC 47 13 400 Antisense
GTCTGGCTCTCATGAGCTTTTGGAG 604 471 414 Antisense
AGCACTGTCCAAATAGATCCCGTAC 280 77 437 Antisense
GCAAACCCTAATTCCGAGAAGTCTC 135 319 514 Antisense
GAGAAGTCTCAAGCTTTTGCTTCAG 644 391 529 Antisense
TTTGCTTCAGTTTTTGGTGTTGCCA 32 669 544 Antisense
GTCTCTGTGGAAATGCGGGTCAAAC 219 471 702 Antisense
Sequence Source Affymetrix Proprietary Database