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[179380_s_at]

Description C18D4.8 /REP_DB=WormBase Gene ID /WP=CE15637 /TR=O45265 /GB=CAB03905.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 54.5
(3)
P 		5.2
(-3)
A 		42.8
(1.6)
A 		50.6
(2.5)
P 		49
B 24.3
(-2.4)
A 		18
(-2.9)
A 		16.8
(-3)
A 		94.9
(3)
P 		78
C 37.6
(-0.1)
A 		5.3
(-2.8)
A 		2.9
(-3)
A 		74.9
(3)
P 		72
avr 38.8
(-0.3) 		9.5
(-3) 		20.8
(-1.9) 		73.5
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 5.8
(-3)
A 		61.6
(0.6)
P 		67.9
(1)
P 		98
(3)
P 		41.1
(-0.7)
P 		50.3
(-0.1)
P 		92
B 35.2
(-3)
A 		63.1
(1.7)
P 		70.5
(3)
P 		53
(0)
P 		66.7
(2.4)
P 		66.8
(2.4)
P 		35
C 32.6
(-3)
A 		61.5
(-0.9)
P 		62.1
(-0.9)
P 		116
(3)
M 		71.7
(-0.2)
P 		72.9
(-0.1)
P 		83
avr 24.5
(-3) 		62.1
(0.5) 		66.8
(0.9) 		89
(3) 		59.8
(0.3) 		63.3
(0.6) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.8
(3)
P 		1.1
(-3)
A 		11.2
(0.2)
A 		7.4
(-1)
P 		19
B 7.7
(-1.6)
A 		4.4
(-2.8)
A 		3.9
(-3)
A 		20.2
(3)
P 		16
C 12.4
(2.9)
A 		1.5
(-2.7)
A 		1
(-3)
A 		12.6
(3)
P 		12
avr 13.3
(2.9) 		2.3
(-3) 		5.4
(-1.3) 		13.4
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.1
(-3)
A 		21.9
(2.2)
P 		14.8
(0.5)
P 		24.9
(3)
P 		12.4
(-0.2)
P 		12.2
(-0.2)
P 		24
B 12.2
(-3)
A 		21
(0.5)
P 		17.1
(-1)
P 		14
(-2.3)
P 		27.1
(3)
P 		24.9
(2.1)
P 		15
C 12.1
(-3)
A 		18.8
(0.3)
P 		15.8
(-1.2)
P 		23.3
(2.5)
M 		23.2
(2.4)
P 		24.4
(3)
P 		12
avr 8.5
(-3) 		20.6
(2.9) 		15.9
(0.6) 		20.7
(2.9) 		20.9
(3) 		20.5
(2.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179380_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14762
Sequence Type Exemplar sequence
Representative Public ID C18D4.8 NCBI
Target Description C18D4.8 /REP_DB=WormBase Gene ID /WP=CE15637 /TR=O45265 /GB=CAB03905.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075043 NCBI Caenorhabditis elegans C18D4.8 (C18D4.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000019858 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17546751:17549369:-1 11/11 None
C18D4.8 ENSEMBL cdna:known chromosome:CEL140:V:17546751:17549561:-1 gene:C18D4.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17546750-17549154(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18D4.8
Entrez Gene 180156 Entrez gene
SwissProt O45265 EMBL-EBI
WormBase CE31882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54126 Hypothetical protein C18D4.8 [Caenorhabditis elegans] emb|CAB03905.2| Hypothetical protein C18D4.8 [Caenorhabditis elegans] ref|NP_507444.2| C18D4.8 [Caenorhabditis elegans] 0.0
blast CAB07198 Hypothetical protein F31E9.1 [Caenorhabditis elegans] ref|NP_507384.1| F31E9.1 [Caenorhabditis elegans] 1.0E-130
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 3.0E-28
blast T18734 hypothetical protein B0391.6 - Caenorhabditis elegans 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.9E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.7E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.2E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.9E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.7E-4
Sequence
Target Sequence 
>C. ELEGANS:179380_S_AT
gatgggttatcgcgagttcaagttttggagccaagaagttgcacagggaacttttgagct
agaatcttgtctttgttctgatgttggttcacatttaagatttccgcaaagagtcatcaa
catgattttgagcaaagctcgaccagttgacaggttcgtattgtggaaagtgtctggacg
attccaatccaacattcttactgacgttcaaaatttccgtgttgtcattcacaatcgttc
tgtcaggcttgaaatggaccaggattgcgttaaatatacggatgaagaaatcgctaaaag
tgacgcaaatgtgaaaatcaaaaaagagaagtccaatacctggcagatttcgggcggcaa
tctcgctatgacactaaacgacttgaaaataatgttggaaggctctgaacttgagttcag
cacattcaaactcgaggtcgatcagtttcaaccgttcatattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGTTATCGCGAGTTCAAGTTT 598 323 858 Antisense
CTTGTCTTTGTTCTGATGTTGGTTC 629 217 923 Antisense
GTTGGTTCACATTTAAGATTTCCGC 40 437 940 Antisense
GTGTCTGGACGATTCCAATCCAACA 195 487 1027 Antisense
AATCCAACATTCTTACTGACGTTCA 322 167 1043 Antisense
AATTTCCGTGTTGTCATTCACAATC 149 175 1069 Antisense
ATTCACAATCGTTCTGTCAGGCTTG 400 11 1084 Antisense
GAAGTCCAATACCTGGCAGATTTCG 307 335 1185 Antisense
GGCAATCTCGCTATGACACTAAACG 127 535 1213 Antisense
GTTGGAAGGCTCTGAACTTGAGTTC 341 435 1251 Antisense
CGATCAGTTTCAACCGTTCATATTT 346 249 1296 Antisense
Sequence Source Affymetrix Proprietary Database