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[179379_at] 7TM chemoreceptor, srw family

Description K10G4.2 /REP_DB=WormBase Gene ID /WP=CE16245 /TR=O45673 /GB=CAB07257.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 01      6grp_cgc > 37      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 3.3
(-3)
A 		5.8
(-1.9)
A 		12.6
(1.2)
A 		16.7
(3)
A 		13
B 5.1
(-3)
A 		6.8
(-2.8)
A 		12.2
(-2.3)
A 		62.7
(3)
A 		58
C 10.7
(-2.5)
A 		8.8
(-2.7)
A 		4
(-3)
A 		91.6
(3)
A 		88
avr 6.4
(-3) 		7.1
(-2.9) 		9.6
(-2.6) 		57
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 7.6
(-2.6)
A 		8.6
(-2.4)
A 		14.5
(-1.4)
A 		5
(-3)
A 		6.8
(-2.7)
A 		41
(3)
A 		36
B 10.3
(2.6)
A 		10.7
(3)
A 		7.6
(0.2)
A 		7.5
(0.1)
A 		8
(0.5)
A 		4.1
(-3)
A 		7
C 5.7
(-2.8)
A 		13.3
(-1.2)
A 		4.8
(-3)
A 		33.8
(3)
A 		5
(-3)
A 		8.3
(-2.3)
A 		29
avr 7.9
(-2.3) 		10.9
(-0.7) 		9
(-1.7) 		15.4
(1.7) 		6.6
(-3) 		17.8
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-3)
A 		1.3
(-2.7)
A 		3.3
(3)
A 		2.4
(0.4)
A 		2
B 1.6
(-3)
A 		1.7
(-2.9)
A 		2.8
(-2.4)
A 		13.4
(3)
A 		12
C 3.5
(-2.1)
A 		2.5
(-2.5)
A 		1.4
(-3)
A 		15.4
(3)
A 		14
avr 2.1
(-2.8) 		1.8
(-3) 		2.5
(-2.5) 		10.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		3.1
(-1.8)
A 		3.2
(-1.7)
A 		1.3
(-3)
A 		2
(-2.5)
A 		10
(3)
A 		9
B 3.6
(3)
A 		3.6
(3)
A 		1.8
(-2.1)
A 		2
(-1.6)
A 		3.3
(2.1)
A 		1.5
(-3)
A 		2
C 2.1
(-2)
A 		4.1
(0.1)
A 		1.2
(-3)
A 		6.8
(3)
A 		1.6
(-2.6)
A 		2.8
(-1.3)
A 		6
avr 2.4
(-2.3) 		3.6
(0.3) 		2.1
(-3) 		3.4
(-0.1) 		2.3
(-2.6) 		4.8
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14520
Sequence Type Exemplar sequence
Representative Public ID K10G4.2 NCBI
Target Description K10G4.2 /REP_DB=WormBase Gene ID /WP=CE16245 /TR=O45673 /GB=CAB07257.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074972 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-47) (srw-47) mRNA, complete cds. 11/11 None
K10G4.2 ENSEMBL cdna:known chromosome:CEL140:V:17263251:17264657:-1 gene:K10G4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17263250-17264657(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-47
Ensembl K10G4.2
Entrez Gene 187277 Entrez gene
SwissProt O45673 EMBL-EBI
WormBase CE16245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07257 Hypothetical protein K10G4.2 [Caenorhabditis elegans] ref|NP_507373.1| Serpentine Receptor, class W family member (srw-47) [Caenorhabditis elegans] 1.0E-149
blast CAE17813 Hypothetical protein F14F8.11 [Caenorhabditis elegans] ref|NP_001023799.1| Serpentine Receptor, class W family member (srw-42) [Caenorhabditis elegans] 7.0E-80
blast CAB07190 Hypothetical protein F14F8.6 [Caenorhabditis elegans] ref|NP_507223.1| Serpentine Receptor, class W family member (srw-44) [Caenorhabditis elegans] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 2.0E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507373.1 6 7-29,49-71,91-113,162-184,205-227,242-264
K10G4.2 6 7-29,49-71,91-113,162-184,205-227,242-264
Sequence
Target Sequence 
>C. ELEGANS:179379_AT
atttttgttctgatatccccatttatgctatttttccattatcatatcactattcgcaaa
aattccgtctggcacccatctccagattgcttaaatttcccgccaaactactcacaaatt
gagtattattatctggcaaccgaactttctggtaaactgggaaatgcgctgattgaaaaa
atgctacatatcgaaggagtattattcaagtttattccatctatagatcttctggtggca
actttaatcttggtttctgagctcaaaaaatggaaaaagatcaaagtgacaattaaaagc
aaaaatgacaaggagcggacaacaaaattagttttcttcgtcactctttcatttttagtt
gcaattataccacaaggaatatcatacattattatgcttcaaactctggagggatccatt
tttagagttatagttaattatttgtcagttacatattcatttttatcggtaatcaatggt
gccatccattttttaattgtgtattttatggcgtccgaataccgaacagcggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTGTTCTGATATCCCCATTTA 618 15 298 Antisense
ATCCCCATTTATGCTATTTTTCCAT 287 39 312 Antisense
TTCGCAAAAATTCCGTCTGGCACCC 419 697 350 Antisense
TCCAGATTGCTTAAATTTCCCGCCA 85 589 378 Antisense
TCCCGCCAAACTACTCACAAATTGA 391 597 395 Antisense
ATTATCTGGCAACCGAACTTTCTGG 642 13 425 Antisense
ATAGATCTTCTGGTGGCAACTTTAA 160 21 520 Antisense
TTCTTCGTCACTCTTTCATTTTTAG 66 691 631 Antisense
GGTGCCATCCATTTTTTAATTGTGT 70 501 775 Antisense
AATTGTGTATTTTATGGCGTCCGAA 289 179 792 Antisense
GGCGTCCGAATACCGAACAGCGGCT 549 541 807 Antisense
Sequence Source Affymetrix Proprietary Database