[Home] | [Total List]

[179378_at]

Description C44F1.1 /REP_DB=WormBase Gene ID /WP=CE02161 /TR=Q18627 /GB=CAA84319.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 471
1 2 3 4 range
A 106.4
(-2.8)
P 		105
(-2.8)
A 		93.5
(-3)
P 		440
(3)
P 		347
B 75.7
(-2.4)
P 		31.6
(-3)
A 		139.4
(-1.6)
P 		502.5
(3)
P 		471
C 80.5
(-2.8)
P 		66.5
(-3)
A 		129.5
(-1.9)
P 		422.8
(3)
P 		356
avr 87.5
(-2.7) 		67.7
(-3) 		120.8
(-2.2) 		455.1
(3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 464
1 2 3 4 5 6 range
A 76
(-2.3)
A 		40.9
(-2.8)
A 		28.1
(-3)
A 		84.2
(-2.2)
P 		450.2
(3)
P 		315.3
(1.1)
P 		422
B 50.4
(-3)
A 		74.6
(-2.7)
A 		91.9
(-2.4)
P 		122.9
(-2)
P 		428.6
(2.1)
P 		492
(3)
P 		442
C 36.8
(-3)
A 		44.8
(-2.9)
A 		64.5
(-2.6)
A 		128
(-1.7)
P 		261.1
(0.3)
P 		443.5
(3)
P 		407
avr 54.4
(-3) 		53.4
(-3) 		61.5
(-2.9) 		111.7
(-2) 		380
(2.4) 		416.9
(3) 		364
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 38.8
(-0.7)
P 		22.8
(-3)
A 		24.5
(-2.8)
P 		64.4
(3)
P 		42
B 24.1
(-2)
P 		7.8
(-3)
A 		32.3
(-1.5)
P 		107.1
(3)
P 		99
C 26.7
(-2.1)
P 		19.1
(-3)
A 		45.1
(-0)
P 		71.3
(3)
P 		52
avr 29.9
(-1.8) 		16.6
(-3) 		34
(-1.4) 		80.9
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 14
(-2.6)
A 		14.5
(-2.6)
A 		6.1
(-3)
A 		21.4
(-2.3)
P 		135.9
(3)
P 		76.8
(0.3)
P 		130
B 17.5
(-3)
A 		24.8
(-2.7)
A 		22.3
(-2.8)
P 		32.5
(-2.5)
P 		174.1
(2.7)
P 		183.5
(3)
P 		166
C 13.6
(-3)
A 		13.7
(-3)
A 		16.4
(-2.9)
A 		25.8
(-2.5)
P 		84.5
(0.2)
P 		148.5
(3)
P 		135
avr 15
(-3) 		17.7
(-2.9) 		14.9
(-3) 		26.6
(-2.4) 		131.5
(2.8) 		136.3
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6295
Sequence Type Exemplar sequence
Representative Public ID C44F1.1 NCBI
Target Description C44F1.1 /REP_DB=WormBase Gene ID /WP=CE02161 /TR=Q18627 /GB=CAA84319.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065360 NCBI Caenorhabditis elegans C44F1.1 (C44F1.1) mRNA, complete cds. 11/11 None
C44F1.1 ENSEMBL cdna:known chromosome:CEL140:III:3760567:3763059:-1 gene:C44F1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024035 6/11 Cross Hyb Matching Probes None
SNAP00000024030 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3760566-3763059(-) 98.85 100.0
Public Domain and Genome References
Gene Title
Ensembl C44F1.1
Entrez Gene 183460 Entrez gene
SwissProt Q18627 EMBL-EBI
WormBase CE34163 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88852 Hypothetical protein C44F1.1 [Caenorhabditis elegans] emb|CAA84319.3| Hypothetical protein C44F1.1 [Caenorhabditis elegans] ref|NP_497761.2| C44F1.1 [Caenorhabditis elegans] 0.0
blast CAE64493 Hypothetical protein CBG09219 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179378_AT
ggtcacttctcaatttgctacggtattgaaaacggaaaaccaaagattggctcaatttcc
gcagagcaagtgaaagattttaagcaaggactccctgaaatgttgattgatgagcattat
ccatccaaatatcatagtttgattcgaatgagtatggaagatgaagatgatggctcaccg
gcagtatctgttcagaaaagagaaatatttaataattataaaaccgagagaagatcagtg
gaaagtgtgtcgataatggatgatgagacaaatcgagtcgatgttttgagtggagcactt
cttgctcgacagtccccgtctccacagaatttgaacccgtttgttccaaatattgatatc
gccgcttttactaataataactcccaacttacacaatcaatattcccactgcttcacagt
ctaagcagtaacctggacataagtactttactcaaatctttcacaagtcccccaactaac
gaagaagatcatgaaatgtcagatacatcaggagatgatcctccaacttcatcaattgct
tcattacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCACTTCTCAATTTGCTACGGTA 338 503 1213 Antisense
GATTGGCTCAATTTCCGCAGAGCAA 591 435 1257 Antisense
GATGAAGATGATGGCTCACCGGCAG 136 413 1372 Antisense
GCTCACCGGCAGTATCTGTTCAGAA 554 301 1385 Antisense
GTGGAGCACTTCTTGCTCGACAGTC 58 491 1502 Antisense
ATTGATATCGCCGCTTTTACTAATA 601 3 1564 Antisense
TAATAACTCCCAACTTACACAATCA 372 633 1587 Antisense
TACACAATCAATATTCCCACTGCTT 277 643 1602 Antisense
TTCCCACTGCTTCACAGTCTAAGCA 165 697 1615 Antisense
TACTCAAATCTTTCACAAGTCCCCC 564 643 1661 Antisense
ACTTCATCAATTGCTTCATTACTTC 615 103 1738 Antisense
Sequence Source Affymetrix Proprietary Database