[Home] | [Total List]

[179377_at]

Description F19B6.3 /REP_DB=WormBase Gene ID /WP=CE05668 /TR=Q19582 /GB=CAA93458.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 36.8
(-3)
A 		64
(1.4)
A 		44.6
(-1.7)
A 		73.8
(3)
A 		37
B 36.3
(2.6)
A 		38.4
(3)
A 		6.8
(-3)
A 		33.1
(2)
A 		32
C 15
(-2.6)
A 		22.8
(-1.5)
A 		11.9
(-3)
A 		55.5
(3)
A 		44
avr 29.4
(-1.5) 		41.7
(0.7) 		21.1
(-3) 		54.1
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 15.4
(-2)
A 		7.3
(-2.8)
A 		29.6
(-0.6)
A 		16.4
(-1.9)
A 		66.2
(3)
A 		5.1
(-3)
A 		61
B 16.8
(-1.8)
A 		51.9
(2)
A 		50
(1.8)
A 		41.1
(0.9)
A 		60.7
(3)
A 		5.4
(-3)
A 		55
C 25.2
(-3)
A 		45.9
(0.4)
A 		30
(-2.2)
A 		54.8
(1.9)
A 		49.1
(1)
A 		61.3
(3)
A 		36
avr 19.1
(-3) 		35
(-0.6) 		36.5
(-0.4) 		37.4
(-0.2) 		58.7
(3) 		23.9
(-2.3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.4
(2)
A 		13.9
(3)
A 		11.7
(-1.3)
A 		10.8
(-3)
A 		3
B 11.6
(3)
A 		9.5
(1.7)
A 		1.6
(-3)
A 		7.1
(0.3)
A 		10
C 5
(-2.1)
A 		6.6
(-0.2)
A 		4.2
(-3)
A 		9.3
(3)
A 		5
avr 10
(3) 		10
(3) 		5.8
(-3) 		9.1
(1.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.8
(-2.5)
A 		2.6
(-2.6)
A 		6.5
(-1.3)
A 		4.2
(-2)
A 		20
(3)
A 		1.2
(-3)
A 		19
B 5.8
(-2)
A 		17.3
(1)
A 		12.1
(-0.3)
A 		10.9
(-0.6)
A 		24.7
(3)
A 		2
(-3)
A 		23
C 9.4
(-2.2)
A 		14
(-0)
A 		7.6
(-3)
A 		11
(-1.4)
A 		15.9
(0.9)
A 		20.5
(3)
A 		13
avr 6
(-3) 		11.3
(-0.8) 		8.7
(-1.9) 		8.7
(-1.9) 		20.2
(3) 		7.9
(-2.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10058
Sequence Type Exemplar sequence
Representative Public ID F19B6.3 NCBI
Target Description F19B6.3 /REP_DB=WormBase Gene ID /WP=CE05668 /TR=Q19582 /GB=CAA93458.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069946(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069946 NCBI Caenorhabditis elegans F19B6.3 (F19B6.3) mRNA, complete cds. 11/11 None
SNAP00000008407 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12327331:12328717:1 10/11 None
GENEFINDER00000008413 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12327331:12328717:1 11/11 None
F19B6.3 ENSEMBL cdna:known chromosome:CEL140:IV:12327331:12328482:1 gene:F19B6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12327336-12328488(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B6.3
Entrez Gene 184667 Entrez gene
SwissProt Q19582 EMBL-EBI
WormBase CE05668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93458 Hypothetical protein F19B6.3 [Caenorhabditis elegans] ref|NP_502347.1| F19B6.3 [Caenorhabditis elegans] 0.0
blast CAA93458 Hypothetical protein F19B6.3 [Caenorhabditis elegans] ref|NP_502347.1| F19B6.3 [Caenorhabditis elegans] 1.0E-175
blast CAB07421 Hypothetical protein H01G02.1 [Caenorhabditis elegans] ref|NP_502233.1| H01G02.1 [Caenorhabditis elegans] 9.0E-13
blast CAB07421 Hypothetical protein H01G02.1 [Caenorhabditis elegans] ref|NP_502233.1| H01G02.1 [Caenorhabditis elegans] 1.0E-12
blast CAB07421 Hypothetical protein H01G02.1 [Caenorhabditis elegans] ref|NP_502233.1| H01G02.1 [Caenorhabditis elegans] 8.0E-11
Sequence
Target Sequence 
>C. ELEGANS:179377_AT
gatgatgcctctgctatatctacagtggctgcatccaattcggaagcctcactcgtggcc
agtatcccgaatgttttcaaagttgagaacatcgtggaacctccacaaatgacaattatg
cgatgggaggggtttgagtaccgaacaaaccgcaggtacaggaccgtctgcaaaaagtgt
gaagggctccagcgcctcaagtgcaaccacattttcgagttggataagcaatccaataaa
agagttgcttcgcaaccaatggatatagatgcaaagcgtccgaggacttcgcatggaata
actatcagcctgttcaaggactgcacaagggtcccattcaaggcccaatttccaaagaaa
cttgaggataaatatggagtcaaattcaccaaaattgagcacagcaacatgccgttcaat
gacgcgtcgagatggtgctacttcaatttggaagtgtcagaggaagatttggcgaaactc
ccgatattggatgactgggtgaatagcttcaaggtcgggagcatcaacaagaaagcggat
cacttttttcaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATGCCTCTGCTATATCTACAG 177 411 457 Antisense
GCTGCATCCAATTCGGAAGCCTCAC 384 297 484 Antisense
TGGCCAGTATCCCGAATGTTTTCAA 392 543 512 Antisense
CAAACCGCAGGTACAGGACCGTCTG 174 191 602 Antisense
GCGTCCGAGGACTTCGCATGGAATA 316 289 732 Antisense
CTATCAGCCTGTTCAAGGACTGCAC 198 225 758 Antisense
CAAGGGTCCCATTCAAGGCCCAATT 569 183 782 Antisense
GCAACATGCCGTTCAATGACGCGTC 357 319 860 Antisense
ATGACGCGTCGAGATGGTGCTACTT 37 45 875 Antisense
GAAGATTTGGCGAAACTCCCGATAT 139 337 919 Antisense
GAAAGCGGATCACTTTTTTCACCGA 233 359 987 Antisense
Sequence Source Affymetrix Proprietary Database