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[179376_at]

Description K09C8.2 /REP_DB=WormBase Gene ID /WP=CE12006 /TR=O01341 /GB=CAA91998.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 19
(-1.8)
A 		9
(-3)
A 		59.5
(3)
M 		57.7
(2.8)
A 		51
B 4.9
(-3)
A 		39.7
(1.2)
A 		8.9
(-2.5)
A 		54.5
(3)
A 		50
C 29.5
(-3)
A 		50
(2.2)
A 		37.5
(-1)
A 		53.1
(3)
P 		24
avr 17.8
(-3) 		32.9
(-0.6) 		35.3
(-0.2) 		55.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 37.6
(1.3)
A 		3.5
(-3)
A 		51.1
(3)
A 		21.2
(-0.8)
A 		35.8
(1.1)
A 		4.5
(-2.9)
A 		48
B 30.6
(-0.7)
A 		45.5
(3)
A 		21.2
(-3)
A 		31.5
(-0.5)
A 		34.6
(0.3)
A 		35.5
(0.5)
A 		24
C 34.4
(2.2)
A 		17.8
(-2.2)
A 		37.6
(3)
A 		14.6
(-3)
A 		22.8
(-0.9)
A 		18.8
(-1.9)
A 		23
avr 34.2
(2.2) 		22.3
(-2) 		36.6
(3) 		22.4
(-2) 		31.1
(1.1) 		19.6
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.9
(-0.8)
A 		2
(-3)
A 		15.6
(3)
M 		8.4
(-0.2)
A 		14
B 1.6
(-3)
A 		9.8
(1.9)
A 		2.1
(-2.7)
A 		11.6
(3)
A 		10
C 9.8
(-2.1)
A 		14.4
(3)
A 		13.1
(1.6)
A 		9
(-3)
P 		5
avr 6.1
(-3) 		8.7
(0.7) 		10.3
(3) 		9.7
(2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.9
(0.5)
A 		1.2
(-2.9)
A 		11.1
(3)
A 		5.4
(-0.4)
A 		10.8
(2.8)
A 		1.1
(-3)
A 		10
B 10.7
(0.3)
A 		15.2
(3)
A 		5.1
(-3)
A 		8.4
(-1)
A 		14
(2.3)
A 		13.2
(1.8)
A 		10
C 12.7
(3)
A 		5.4
(-1.5)
A 		9.6
(1.1)
A 		2.9
(-3)
A 		7.4
(-0.2)
A 		6.3
(-0.9)
A 		10
avr 10.1
(2.3) 		7.3
(-1) 		8.6
(0.5) 		5.6
(-3) 		10.7
(3) 		6.9
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16396
Sequence Type Exemplar sequence
Representative Public ID K09C8.2 NCBI
Target Description K09C8.2 /REP_DB=WormBase Gene ID /WP=CE12006 /TR=O01341 /GB=CAA91998.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077430 NCBI Caenorhabditis elegans K09C8.2 (K09C8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000014659 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10958683:10960767:1 11/11 None
SNAP00000014652 ENSEMBL cdna:SNAP chromosome:CEL140:X:10959636:10960767:1 10/11 None
K09C8.2 ENSEMBL cdna:known chromosome:CEL140:X:10959490:10960789:1 gene:K09C8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10959498-10960767(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09C8.2
Entrez Gene 181286 Entrez gene
SwissProt O01341 EMBL-EBI
WormBase CE12006 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91998 Hypothetical protein K09C8.2 [Caenorhabditis elegans] ref|NP_509831.1| K09C8.2 [Caenorhabditis elegans] 1.0E-106
blast CAA91998 Hypothetical protein K09C8.2 [Caenorhabditis elegans] ref|NP_509831.1| K09C8.2 [Caenorhabditis elegans] 1.0E-105
blast CAE70787 Hypothetical protein CBG17543 [Caenorhabditis briggsae] 1.0E-95
blast CAE70787 Hypothetical protein CBG17543 [Caenorhabditis briggsae] 3.0E-89
blast CAA91998 Hypothetical protein K09C8.2 [Caenorhabditis elegans] ref|NP_509831.1| K09C8.2 [Caenorhabditis elegans] 1.0E-86
blast CAE70787 Hypothetical protein CBG17543 [Caenorhabditis briggsae] 1.0E-72
blast CAD36495 Hypothetical protein K09C8.6 [Caenorhabditis elegans] ref|NP_741898.1| Neuropeptide-Like Protein family member (nlp-19) [Caenorhabditis elegans] 8.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509831.1 4 25-47,62-84,96-118,149-171
K09C8.2 4 25-47,62-84,96-118,149-171
GENEFINDER00000014659 4 245-267,282-304,316-338,369-391
SNAP00000014652 3 33-55,68-90,121-143
Sequence
Target Sequence 
>C. ELEGANS:179376_AT
gacttttatgctgtttctgtttcctttgtacacgttggtgctgtttttgtctgtattgtc
atccttttgtctaccatttatgcaacatatggactatctgtcatgaatctacgcaaaatg
tgcaccgctctatttatttggcttggccacttggcttgtgctggactatttttggtcgct
gtactgattgcatgggttagagacttcaactacgatccattctctattcaacagtctacc
tgccaattcactcgaattccagatgcatgcgatgtttctcttgagcagtacctggcagca
atttcggcgtttgttatcataattgcgttcttcaagtttgcccaaattatgtgtcttcgt
gctctttgcattttcagccaagacgtttttcaacatgttgattgcgaaagcttttacaat
cgctgccttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTTATGCTGTTTCTGTTTCCT 162 373 169 Antisense
GTCTGTATTGTCATCCTTTTGTCTA 667 469 217 Antisense
GTGCACCGCTCTATTTATTTGGCTT 372 481 288 Antisense
TGGTCGCTGTACTGATTGCATGGGT 260 551 341 Antisense
TCAACTACGATCCATTCTCTATTCA 220 631 374 Antisense
TTCAACAGTCTACCTGCCAATTCAC 625 685 395 Antisense
GATGCATGCGATGTTTCTCTTGAGC 152 413 430 Antisense
CCTGGCAGCAATTTCGGCGTTTGTT 539 265 459 Antisense
GCCCAAATTATGTGTCTTCGTGCTC 661 285 508 Antisense
CTTCGTGCTCTTTGCATTTTCAGCC 526 219 523 Antisense
AAGCTTTTACAATCGCTGCCTTACT 514 149 576 Antisense
Sequence Source Affymetrix Proprietary Database