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[179374_at]

Description T14G8.2 /REP_DB=WormBase Gene ID /WP=CE03658 /TR=Q22513 /GB=CAA91807.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 24      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 24.5
(-2.4)
A 		22.1
(-3)
A 		32.1
(-0.4)
A 		45.4
(3)
A 		23
B 15.4
(-3)
A 		15.8
(-2.9)
A 		30
(0.4)
A 		41.2
(3)
A 		26
C 10.3
(-3)
A 		35.4
(0.9)
A 		45
(2.4)
A 		48.6
(3)
A 		38
avr 16.7
(-3) 		24.4
(-1.4) 		35.7
(1) 		45.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 32.9
(-2.6)
A 		34
(-2.5)
A 		70.7
(0.9)
P 		93.9
(3)
P 		62.3
(0.1)
A 		28.5
(-3)
A 		65
B 18.5
(-3)
A 		37.6
(-1.1)
A 		77.3
(3)
A 		65.4
(1.8)
M 		57.1
(0.9)
A 		37.4
(-1.1)
A 		59
C 3.1
(-3)
A 		82.2
(2.8)
P 		52.5
(0.6)
A 		85.6
(3)
A 		39.9
(-0.3)
A 		54.7
(0.8)
A 		83
avr 18.2
(-3) 		51.3
(0.1) 		66.8
(1.6) 		81.6
(3) 		53.1
(0.3) 		40.2
(-0.9) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.9
(3)
A 		4.8
(-3)
A 		8.4
(2.3)
A 		6.6
(-0.4)
A 		4
B 4.9
(-1.8)
A 		3.9
(-3)
A 		6.9
(0.7)
A 		8.8
(3)
A 		5
C 3.4
(-3)
A 		10.2
(0.3)
A 		15.7
(3)
A 		8.2
(-0.7)
A 		12
avr 5.7
(-3) 		6.3
(-2.2) 		10.3
(3) 		7.9
(-0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.1
(-3)
A 		12.1
(-1)
A 		15.4
(0.2)
P 		23.8
(3)
P 		18.8
(1.3)
A 		6.9
(-2.7)
A 		18
B 6.4
(-3)
A 		12.5
(-0.8)
A 		18.8
(1.4)
A 		17.3
(0.9)
M 		23.2
(3)
A 		13.9
(-0.3)
A 		17
C 1.2
(-3)
A 		25.1
(3)
P 		13.4
(0.1)
A 		17.2
(1)
A 		12.9
(-0.1)
A 		18.3
(1.3)
A 		24
avr 4.6
(-3) 		16.6
(1.9) 		15.9
(1.6) 		19.4
(3) 		18.3
(2.6) 		13
(0.4) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17670
Sequence Type Exemplar sequence
Representative Public ID T14G8.2 NCBI
Target Description T14G8.2 /REP_DB=WormBase Gene ID /WP=CE03658 /TR=Q22513 /GB=CAA91807.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077740 NCBI Caenorhabditis elegans T14G8.2 (T14G8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000007539 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12857938:12859460:1 11/11 None
SNAP00000007533 ENSEMBL cdna:SNAP chromosome:CEL140:X:12858412:12859460:1 11/11 None
T14G8.2 ENSEMBL cdna:known chromosome:CEL140:X:12857938:12859460:1 gene:T14G8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12857937-12859460(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14G8.2
Entrez Gene 188502 Entrez gene
SwissProt Q22513 EMBL-EBI
WormBase CE03658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91807 Hypothetical protein T14G8.2 [Caenorhabditis elegans] ref|NP_510141.1| T14G8.2 [Caenorhabditis elegans] 0.0
blast CAA91807 Hypothetical protein T14G8.2 [Caenorhabditis elegans] ref|NP_510141.1| T14G8.2 [Caenorhabditis elegans] 1.0E-127
Sequence
Target Sequence 
>C. ELEGANS:179374_AT
tgttcgtgatgatgcttctcagacaattcatgagtatttgaaaatgttttcgaataacaa
gcagcttgttgccatggacggtttctccgatagggctagaattgcgagaacgaaaattac
cagtaaaaattttacaagtggaaagttgccggtgaacccaaatgaatggttcgaatacga
ctacttccatgaacgattattcgaaattgttctcatctcaagacttattgtggataacca
aaacatacaaaccataataagctcgtttgtggatggagaaacatttgagagattgaggtt
tttgcactgtcaaaacgctgacaatatcgatttgagatatgcactccaaggagtggccgc
tattgagtggacagaaaacaatgttttcatggaaaaattcaaaggaattccggccatgac
aaattacttcatcgagaccggctacataatatgggattccaagggcaaagtggcaacagt
tcatgtggatcccgaaaaatcaacgttcactctaattggctgggaaaatatcatatctcc
gaggctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCGTGATGATGCTTCTCAGACA 339 563 477 Antisense
AGCTTGTTGCCATGGACGGTTTCTC 224 79 539 Antisense
GGACGGTTTCTCCGATAGGGCTAGA 220 523 552 Antisense
GGTTCGAATACGACTACTTCCATGA 708 505 644 Antisense
GAAATTGTTCTCATCTCAAGACTTA 627 363 679 Antisense
GAGAGATTGAGGTTTTTGCACTGTC 432 395 763 Antisense
GGAGTGGCCGCTATTGAGTGGACAG 695 515 826 Antisense
ATTACTTCATCGAGACCGGCTACAT 640 3 899 Antisense
GTGGCAACAGTTCATGTGGATCCCG 621 491 946 Antisense
CAACGTTCACTCTAATTGGCTGGGA 85 185 977 Antisense
GAAAATATCATATCTCCGAGGCTTA 591 353 1000 Antisense
Sequence Source Affymetrix Proprietary Database