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[179372_at]

Description T19C9.5 /REP_DB=WormBase Gene ID /WP=CE16422 /TR=O45790 /GB=CAB07484.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 39      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 223.7
(3)
P 		12.2
(-2.8)
A 		3.9
(-3)
A 		95.5
(-0.5)
A 		220
B 122.1
(3)
A 		13.2
(-2.5)
A 		3.4
(-3)
A 		34.7
(-1.4)
A 		119
C 277.1
(3)
P 		5.3
(-3)
A 		3.9
(-3)
A 		53.7
(-1.9)
A 		273
avr 207.6
(3) 		10.2
(-2.8) 		3.7
(-3) 		61.3
(-1.3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 9.4
(-3)
A 		12.6
(-2.8)
A 		92
(3)
A 		42.6
(-0.6)
A 		17.7
(-2.4)
A 		15.9
(-2.5)
A 		83
B 63.1
(2.2)
A 		39.9
(0.1)
A 		72.2
(3)
A 		40
(0.1)
A 		4.7
(-3)
A 		5.8
(-2.9)
A 		68
C 57.3
(1.5)
A 		39.3
(0)
A 		57.7
(1.5)
A 		76.3
(3)
A 		25.4
(-1.1)
A 		1.3
(-3)
A 		75
avr 43.3
(0.2) 		30.6
(-0.9) 		74
(3) 		53
(1.1) 		15.9
(-2.3) 		7.7
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 81.5
(3)
P 		2.7
(-2.9)
A 		1
(-3)
A 		14
(-2)
A 		81
B 38.9
(3)
A 		3.3
(-2.6)
A 		0.8
(-3)
A 		7.4
(-2)
A 		38
C 91.7
(3)
P 		1.5
(-3)
A 		1.4
(-3)
A 		9.1
(-2.5)
A 		90
avr 70.7
(3) 		2.5
(-2.9) 		1.1
(-3) 		10.2
(-2.2) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.7
(-3)
A 		4.5
(-2.1)
A 		20
(3)
A 		10.8
(-0)
A 		5.3
(-1.8)
A 		3.9
(-2.3)
A 		18
B 21.9
(3)
A 		13.3
(0.4)
A 		17.5
(1.7)
A 		10.6
(-0.4)
A 		1.9
(-3)
A 		2.1
(-2.9)
A 		20
C 21.2
(3)
A 		12
(0.3)
A 		14.7
(1.1)
A 		15.3
(1.3)
A 		8.2
(-0.8)
A 		0.4
(-3)
A 		21
avr 14.9
(2) 		9.9
(0.1) 		17.4
(3) 		12.2
(1) 		5.1
(-1.8) 		2.1
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13321
Sequence Type Exemplar sequence
Representative Public ID T19C9.5 NCBI
Target Description T19C9.5 /REP_DB=WormBase Gene ID /WP=CE16422 /TR=O45790 /GB=CAB07484.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074963 NCBI Caenorhabditis elegans T19C9.5 (T19C9.5) mRNA, complete cds. 11/11 A 
SNAP00000010313 ENSEMBL cdna:SNAP chromosome:CEL140:V:17229756:17230538:1 11/11 None
GENEFINDER00000010321 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17229756:17232625:1 11/11 None
T19C9.5 ENSEMBL cdna:known chromosome:CEL140:V:17229756:17230538:1 gene:T19C9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17229755-17230538(+) 100.0 100.0
chrV:17489006-17489781(+) 95.46 95.46
Public Domain and Genome References
Gene Title
Ensembl T19C9.5
Entrez Gene 188600 Entrez gene
SwissProt O45790 EMBL-EBI
WormBase CE16422 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 1.0E-115
blast CAA16500 Hypothetical protein F08E10.7 [Caenorhabditis elegans] ref|NP_507429.1| F08E10.7 [Caenorhabditis elegans] 1.0E-110
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 1.0E-103
blast CAA16500 Hypothetical protein F08E10.7 [Caenorhabditis elegans] ref|NP_507429.1| F08E10.7 [Caenorhabditis elegans] 4.0E-99
blast CAB07485 Hypothetical protein T19C9.6 [Caenorhabditis elegans] ref|NP_507365.1| T19C9.6 [Caenorhabditis elegans] 3.0E-76
blast NP_504963 C50E3.10 [Caenorhabditis elegans] gb|AAB04885.1| Hypothetical protein C50E3.10 [Caenorhabditis elegans] 8.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-40
Sequence
Target Sequence 
>C. ELEGANS:179372_AT
gctctaactgcagctgctcatgctgatcgtcactttaatccacaacatcgatggaacgca
gaagcaattgataatattgttttcattcataacaaactaagaaacgctgcttcgcatgga
ctttgggaacgccacagcatctccaaatcgtcaaacatgcaactactgtcctggaatgag
tcattggttgcggaagccgaaaatgaaaagtactactgtgaacctgcggataacaaaaac
ctacctatcaaacttggagataacatctaccaatacgatgtcaacacttatgacgatatt
gatggcgttggagcaatgggaagtattaataaggatacacacgatgcgctgaaatccgaa
gcgaaagctgcaaagaatcgtcttagacaaatgctttactccaaatctaagtcaattgga
tgtatctacgaaagttgtgacaagattgattcgaaggggatcaactataacactcgcctt
ttaatctgcaaatatagtcctccattggagaacattgatgagaagctgttcgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTAACTGCAGCTGCTCATGCTG 702 299 37 Antisense
TGCAGCTGCTCATGCTGATCGTCAC 143 577 45 Antisense
GCTGATCGTCACTTTAATCCACAAC 663 295 58 Antisense
TCATTGGTTGCGGAAGCCGAAAATG 19 615 217 Antisense
GCTGAAATCCGAAGCGAAAGCTGCA 112 295 384 Antisense
GCGAAAGCTGCAAAGAATCGTCTTA 221 289 397 Antisense
CAACTATAACACTCGCCTTTTAATC 690 187 498 Antisense
AACACTCGCCTTTTAATCTGCAAAT 541 127 505 Antisense
TCTGCAAATATAGTCCTCCATTGGA 292 609 521 Antisense
TCCTCCATTGGAGAACATTGATGAG 706 593 534 Antisense
ACATTGATGAGAAGCTGTTCGACAA 304 105 548 Antisense
Sequence Source Affymetrix Proprietary Database