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[179370_at]

Description F56G4.4 /REP_DB=WormBase Gene ID /WP=CE18758 /TR=Q9XUY1 /GB=CAB04486.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 15      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 50.7
(1)
A 		9.7
(-3)
A 		15
(-2.5)
A 		71
(3)
A 		61
B 82.3
(3)
A 		82.3
(3)
A 		44.4
(-3)
A 		60.7
(-0.4)
A 		38
C 68.3
(1.7)
A 		27.1
(-3)
A 		80
(3)
A 		57.2
(0.4)
A 		53
avr 67.1
(3) 		39.7
(-3) 		46.5
(-1.5) 		63
(2.1) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 35.6
(-1.2)
A 		38.8
(-1)
A 		73.5
(1.4)
A 		8.5
(-3)
A 		97.9
(3)
A 		83
(2)
A 		89
B 79.9
(0.3)
A 		49.2
(-3)
A 		104.9
(3)
A 		52.2
(-2.7)
A 		67.7
(-1)
A 		76.5
(-0.1)
A 		56
C 33.6
(-1.1)
A 		75.8
(3)
A 		41.5
(-0.3)
A 		14
(-3)
A 		74.6
(2.9)
A 		47.6
(0.3)
A 		62
avr 49.7
(-0.3) 		54.6
(0.2) 		73.3
(2.3) 		24.9
(-3) 		80.1
(3) 		69
(1.8) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 18.5
(3)
A 		2.1
(-3)
A 		3.9
(-2.3)
A 		10.4
(0)
A 		16
B 26.3
(3)
A 		20.3
(0.8)
A 		10.3
(-3)
A 		12.9
(-2)
A 		16
C 22.6
(1.4)
A 		7.8
(-3)
A 		27.9
(3)
A 		9.6
(-2.5)
A 		20
avr 22.5
(3) 		10.1
(-3) 		14
(-1.1) 		11
(-2.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 6.6
(-2)
A 		13.8
(-0.5)
A 		16
(0)
A 		2.2
(-3)
A 		29.6
(3)
A 		20.2
(0.9)
A 		27
B 27.8
(2.7)
A 		16.4
(-1.9)
A 		25.5
(1.8)
A 		13.8
(-3)
A 		27.5
(2.6)
A 		28.5
(3)
A 		15
C 12.4
(-0.3)
A 		23.1
(2.7)
A 		10.6
(-0.8)
A 		2.8
(-3)
A 		24.2
(3)
A 		15.9
(0.7)
A 		21
avr 15.6
(-0.3) 		17.8
(0.3) 		17.4
(0.2) 		6.3
(-3) 		27.1
(3) 		21.5
(1.4) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1678
Sequence Type Exemplar sequence
Representative Public ID F56G4.4 NCBI
Target Description F56G4.4 /REP_DB=WormBase Gene ID /WP=CE18758 /TR=Q9XUY1 /GB=CAB04486.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060511 NCBI Caenorhabditis elegans F56G4.4 (F56G4.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000039535 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11382748:11388189:1 11/11 None
SNAP00000039532 ENSEMBL cdna:SNAP chromosome:CEL140:I:11383055:11388189:1 11/11 None
F56G4.4 ENSEMBL cdna:known chromosome:CEL140:I:11382748:11388241:1 gene:F56G4.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11382678-11388120(+) 86.55 100.0
Public Domain and Genome References
Gene Title
Ensembl F56G4.4
Entrez Gene 173027 Entrez gene
SwissProt Q9XUY1 EMBL-EBI
WormBase CE18758 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04486 Hypothetical protein F56G4.4 [Caenorhabditis elegans] ref|NP_492912.1| F56G4.4 [Caenorhabditis elegans] 0.0
blast CAB04486 Hypothetical protein F56G4.4 [Caenorhabditis elegans] ref|NP_492912.1| F56G4.4 [Caenorhabditis elegans] 1.0E-180
blast CAE63558 Hypothetical protein CBG08044 [Caenorhabditis briggsae] 1.0E-156
blast CAE63558 Hypothetical protein CBG08044 [Caenorhabditis briggsae] 1.0E-131
blast XP_782450 PREDICTED: similar to CG4291-PA [Strongylocentrotus purpuratus] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR003604 EMBL-EBI Zn-finger, U1-like 4.3E-5
Sequence
Target Sequence 
>C. ELEGANS:179370_AT
gaagccaaccggaaagagcagaattatgtggataaaccaaataataaattcaaaaaattg
acaaaagaggagaaaaaagcacagtgggaagagagacgcagacaaaaagacaccgagaga
gcagaggatgaggagagacgcagagaggcagaagaagacgaagatgtttcagatgaagaa
agtgatgaagatgaagaggaatttgagattattggaacaccagaacgtgaagccctggtg
ctccgcgagcactcatcaactccgcctcccgaggagctccaagagcagcttgaagagccc
ccaaaaatcccagaaattgggctcattgagcccccaaaaccatcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCAACCGGAAAGAGCAGAATT 412 345 814 Antisense
GCACAGTGGGAAGAGAGACGCAGAC 8 317 892 Antisense
GAGACGCAGACAAAAAGACACCGAG 460 393 906 Antisense
AAGACACCGAGAGAGCAGAGGATGA 665 151 920 Antisense
CAGAGGATGAGGAGAGACGCAGAGA 650 205 935 Antisense
GAATTTGAGATTATTGGAACACCAG 330 325 1012 Antisense
TGGAACACCAGAACGTGAAGCCCTG 182 547 1026 Antisense
CCAGAACGTGAAGCCCTGGTGCTCC 490 271 1033 Antisense
CAAGAGCAGCTTGAAGAGCCCCCAA 627 183 1093 Antisense
GAGCCCCCAAAAATCCCAGAAATTG 611 385 1108 Antisense
CATTGAGCCCCCAAAACCATCAATT 557 217 1137 Antisense
Sequence Source Affymetrix Proprietary Database