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[179369_s_at]

Description C18D4.6 /REP_DB=WormBase Gene ID /WP=CE23558 /TR=O45263 /GB=CAB03903.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      6grp_total > 40      4grp_total > 15      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 121.6
(3)
P 		57.4
(-3)
A 		84.4
(-0.5)
A 		111.7
(2.1)
P 		64
B 137.9
(3)
P 		40.3
(-3)
A 		62.9
(-1.6)
A 		94.6
(0.3)
P 		98
C 98.7
(3)
P 		35.1
(-3)
A 		69.9
(0.3)
A 		94.4
(2.6)
A 		64
avr 119.4
(3) 		44.3
(-3) 		72.4
(-0.8) 		100.2
(1.5) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 141.7
(2.2)
P 		138.3
(1.8)
P 		149.9
(3)
P 		138
(1.8)
P 		90.7
(-3)
P 		108.5
(-1.2)
P 		59
B 92.7
(-2.4)
P 		129.2
(1.2)
P 		144.5
(2.8)
P 		146.5
(3)
P 		87.2
(-3)
P 		110.5
(-0.6)
P 		59
C 81.5
(-3)
P 		103.6
(-0.1)
P 		119.3
(2)
A 		126.6
(3)
A 		92.3
(-1.6)
M 		94.4
(-1.3)
P 		45
avr 105.3
(-1.1) 		123.7
(1.2) 		137.9
(3) 		137
(2.9) 		90.1
(-3) 		104.5
(-1.2) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 44.3
(3)
P 		12.5
(-3)
A 		22.1
(-1.2)
A 		16.4
(-2.3)
P 		32
B 44
(3)
P 		10
(-3)
A 		14.6
(-2.2)
A 		20.2
(-1.2)
P 		34
C 32.7
(3)
P 		10.1
(-3)
A 		24.4
(0.8)
A 		15.9
(-1.5)
A 		23
avr 40.3
(3) 		10.9
(-3) 		20.4
(-1.1) 		17.5
(-1.7) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 26.1
(-3)
P 		49.2
(3)
P 		32.6
(-1.3)
P 		35
(-0.7)
P 		27.4
(-2.7)
P 		26.4
(-2.9)
P 		23
B 32.3
(-3)
P 		43
(3)
P 		35.1
(-1.4)
P 		38.8
(0.6)
P 		35.4
(-1.3)
P 		41.2
(2)
P 		11
C 30.2
(1.6)
P 		31.6
(3)
P 		30.4
(1.8)
A 		25.5
(-3)
A 		29.9
(1.3)
M 		31.6
(3)
P 		6
avr 29.5
(-3) 		41.3
(3) 		32.7
(-1.4) 		33.1
(-1.2) 		30.9
(-2.3) 		33.1
(-1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179369_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14539
Sequence Type Exemplar sequence
Representative Public ID C18D4.6 NCBI
Target Description C18D4.6 /REP_DB=WormBase Gene ID /WP=CE23558 /TR=O45263 /GB=CAB03903.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028497(11), NM_075041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028497 NCBI Caenorhabditis elegans C18D4.6c (C18D4.6) mRNA, complete cds. 11/11 None
NM_075041 NCBI Caenorhabditis elegans C18D4.6a (C18D4.6) mRNA, complete cds. 11/11 None
SNAP00000019853 ENSEMBL cdna:SNAP chromosome:CEL140:V:17539594:17540931:-1 11/11 None
GENEFINDER00000019856 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17539594:17540931:-1 11/11 None
C18D4.6c ENSEMBL cdna:known chromosome:CEL140:V:17538408:17540931:-1 gene:C18D4.6 11/11 None
C18D4.6a ENSEMBL cdna:known chromosome:CEL140:V:17539478:17540949:-1 gene:C18D4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182359 4/11 Cross Hyb Matching Probes None
C18D4.6b 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180155 3 2 NM_001028497 179369_s_at (11)
NM_075041 179369_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17539593-17540931(-) 94.32 100.0
Public Domain and Genome References
Ensembl C18D4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04697 Hypothetical protein C18D4.6c [Caenorhabditis elegans] ref|NP_001023668.1| C18D4.6c [Caenorhabditis elegans] 0.0
blast CAB03903 Hypothetical protein C18D4.6a [Caenorhabditis elegans] ref|NP_507442.2| C18D4.6a [Caenorhabditis elegans] 1.0E-170
blast CAB03903 Hypothetical protein C18D4.6a [Caenorhabditis elegans] ref|NP_507442.2| C18D4.6a [Caenorhabditis elegans] 1.0E-164
blast CAH04697 Hypothetical protein C18D4.6c [Caenorhabditis elegans] ref|NP_001023668.1| C18D4.6c [Caenorhabditis elegans] 1.0E-164
Sequence
Target Sequence 
>C. ELEGANS:179369_S_AT
agatgatcaacgtttggagcttttgagcgatgagtctgtctggcgactggaagcttatga
ggcgttcgccgacgctgaacctttgtcgactttggagaaaatacgattgggtgtgattgg
aggaccaatagattcgattgatccgaattggccactgagaaaaattgctccggaacgctt
tttgaatgatcgatggtctcgggctgttcacgatcccagacggatacgacgaaagatcat
tggacaccgtctaccatacagaacgaaagccgaaccagatgtgccttacggaattcctaa
acgagctagactcgctgctcgtgaaaattctggtccagttcgagctccaccgctccttgg
aggtgctcacccaggccagtttcgggctagaggcccagcgggtgtcggagttgttagtag
acatactagacaatttggagcagctagaggtgttcttagaggaccaactggaaatagagt
tgttcctctattccctgtacaaattcgagcaagaccccctgcaccgagccaaacaatcat
ccgtgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGATCAACGTTTGGAGCTTTTG 235 67 339 Antisense
GAGCTTTTGAGCGATGAGTCTGTCT 169 389 355 Antisense
TGAGTCTGTCTGGCGACTGGAAGCT 74 569 369 Antisense
ACGCTGAACCTTTGTCGACTTTGGA 53 91 410 Antisense
AATTGCTCCGGAACGCTTTTTGAAT 235 177 501 Antisense
ATGATCGATGGTCTCGGGCTGTTCA 645 45 524 Antisense
GTCTACCATACAGAACGAAAGCCGA 305 443 587 Antisense
GAAAGCCGAACCAGATGTGCCTTAC 526 357 603 Antisense
ACCCAGGCCAGTTTCGGGCTAGAGG 507 71 707 Antisense
CAGTTTCGGGCTAGAGGCCCAGCGG 547 203 715 Antisense
ACCGAGCCAAACAATCATCCGTGTA 598 89 861 Antisense
Sequence Source Affymetrix Proprietary Database