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[179368_at] [031110 dl] Modified prediction based on EST data, correct splice donor from exon 2

Description W06H3.1 /REP_DB=WormBase Gene ID /WP=CE19013 /TR=Q9XXN2 /GB=CAA16516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 40      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 132.9
(-3)
A 		168.5
(-1.2)
A 		250.2
(3)
A 		183.1
(-0.4)
A 		117
B 106.6
(-3)
A 		177.7
(-0.8)
A 		296.4
(3)
A 		194.8
(-0.2)
P 		190
C 104.5
(-3)
A 		245.1
(2.1)
A 		268.9
(3)
P 		218
(1.1)
P 		164
avr 114.7
(-3) 		197.1
(0.1) 		271.8
(3) 		198.6
(0.2) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 769
1 2 3 4 5 6 range
A 118.4
(-3)
A 		128.2
(-2.9)
A 		160.2
(-2.6)
P 		302.1
(-1.4)
P 		531
(0.5)
P 		819.8
(3)
P 		701
B 51
(-3)
A 		120
(-2.4)
M 		157.9
(-2.1)
A 		238.4
(-1.4)
P 		461.3
(0.5)
P 		754.3
(3)
P 		703
C 100.9
(-2.8)
A 		73.7
(-3)
A 		171.1
(-2.1)
A 		278.5
(-1.2)
P 		592
(1.6)
P 		756
(3)
P 		682
avr 90.1
(-3) 		107.3
(-2.8) 		163.1
(-2.4) 		273
(-1.4) 		528.1
(0.8) 		776.7
(3) 		687
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 48.4
(0.4)
A 		36.6
(-1.5)
A 		65.4
(3)
A 		26.8
(-3)
A 		39
B 34
(-3)
A 		43.9
(-1.3)
A 		68.7
(3)
A 		41.5
(-1.7)
P 		35
C 34.6
(-3)
A 		70.5
(0.6)
A 		93.7
(3)
P 		36.8
(-2.8)
P 		59
avr 39
(-2.4) 		50.3
(-0.8) 		75.9
(3) 		35
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 21.8
(-3)
A 		45.6
(-2.2)
A 		34.9
(-2.6)
P 		76.6
(-1.2)
P 		160.2
(1.7)
P 		199.6
(3)
P 		178
B 17.8
(-3)
A 		39.9
(-2.5)
M 		38.3
(-2.5)
A 		63.1
(-2)
P 		187.4
(0.9)
P 		281.3
(3)
P 		264
C 37.4
(-2.6)
A 		22.5
(-3)
A 		43.5
(-2.5)
A 		56
(-2.1)
P 		191.6
(1.4)
P 		253.1
(3)
P 		231
avr 25.7
(-3) 		36
(-2.7) 		38.9
(-2.6) 		65.2
(-1.9) 		179.7
(1.2) 		244.7
(3) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14505
Sequence Type Exemplar sequence
Representative Public ID W06H3.1 NCBI
Target Description W06H3.1 /REP_DB=WormBase Gene ID /WP=CE19013 /TR=Q9XXN2 /GB=CAA16516.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074840 NCBI Caenorhabditis elegans W06H3.1 (W06H3.1) mRNA, complete cds. 11/11 None
SNAP00000017338 ENSEMBL cdna:SNAP chromosome:CEL140:V:16791960:16795266:1 11/11 None
GENEFINDER00000017343 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16791960:16795266:1 11/11 None
W06H3.1 ENSEMBL cdna:known chromosome:CEL140:V:16791916:16795329:1 gene:W06H3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16791959-16795266(+) 100.0 100.0
Public Domain and Genome References
Gene Title [031110 dl] Modified prediction based on EST data, correct splice donor from exon 2
Ensembl W06H3.1
Entrez Gene 180122 Entrez gene
SwissProt Q9XXN2 EMBL-EBI
WormBase CE36215 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16516 Hypothetical protein W06H3.1 [Caenorhabditis elegans] ref|NP_507241.2| W06H3.1 [Caenorhabditis elegans] 0.0
blast CAE56605 Hypothetical protein CBG24360 [Caenorhabditis briggsae] 0.0
blast AAA82345 Hypothetical protein T14G11.3 [Caenorhabditis elegans] ref|NP_508475.2| T14G11.3 [Caenorhabditis elegans] 4.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507241.2 1 21-43
W06H3.1 1 21-43
SNAP00000017338 1 21-43
GENEFINDER00000017343 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:179368_AT
tgtggctagccacccaaaatctgaagggaactgtaattttcggaaatcgagccagctgct
gcatggagggaagacgtgctccactgggagatcaaatgaagacacttctctcgtgctgtg
gtggtggaaactctgatgaattcgtgaaaaccatcaatacggcaatgtcgaaaacctcaa
aagtccgcggggagtacacggagcaggatctgaacacacgcttcaacaaagtctgccgaa
tcggacgtcgtgttgcctatgtcaatgaaggtggagctctggctcatctctactcgtggc
tcaagtcttccctgactattgagctcgtcccgaagaagggtgctaatgagagcctgaccc
cagctgtcgagaacaacttcaccttgctcacacgtgccgagcaactctggaagtctggca
aaaagtccgacgcgattcgtgttcttcagctgaccgacggggccacccgtagagttgctg
ccgatttcatcgctgatgctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGCTAGCCACCCAAAATCTGAA 192 555 1424 Antisense
TTCGGAAATCGAGCCAGCTGCTGCA 45 693 1462 Antisense
GGAAGACGTGCTCCACTGGGAGATC 439 531 1492 Antisense
AATGAAGACACTTCTCTCGTGCTGT 325 165 1518 Antisense
GGAGCAGGATCTGAACACACGCTTC 481 519 1623 Antisense
CACACGCTTCAACAAAGTCTGCCGA 668 193 1638 Antisense
GAATCGGACGTCGTGTTGCCTATGT 426 329 1661 Antisense
GAAGGTGGAGCTCTGGCTCATCTCT 464 333 1690 Antisense
AGTCTTCCCTGACTATTGAGCTCGT 307 61 1727 Antisense
TGTCGAGAACAACTTCACCTTGCTC 611 557 1788 Antisense
TGCCGATTTCATCGCTGATGCTCGC 345 585 1902 Antisense
Sequence Source Affymetrix Proprietary Database