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[179367_at]

Description C43D7.2 /REP_DB=WormBase Gene ID /WP=CE18547 /TR=Q9XVB8 /GB=CAB03963.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 7.9
(-3)
A 		13.3
(-2.1)
A 		42.4
(3)
A 		25.8
(0.1)
A 		35
B 1.5
(-3)
A 		5.3
(-0.7)
A 		6.7
(0.2)
A 		11.3
(3)
A 		10
C 3.3
(-2.9)
A 		12.6
(3)
A 		3.2
(-3)
A 		7.1
(-0.5)
A 		9
avr 4.2
(-3) 		10.4
(-0.2) 		17.4
(3) 		14.7
(1.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 2.3
(-3)
A 		17
(-1.1)
A 		47.8
(3)
A 		7.5
(-2.3)
A 		38.7
(1.8)
A 		23.1
(-0.3)
A 		46
B 15.7
(0.4)
A 		2.5
(-3)
A 		6.1
(-2)
A 		2.4
(-3)
A 		2.4
(-3)
A 		25.7
(3)
A 		23
C 19.5
(-0.2)
A 		13.7
(-1.2)
A 		21.6
(0.2)
A 		35.6
(2.8)
A 		4.2
(-3)
A 		36.6
(3)
A 		32
avr 12.5
(-2.5) 		11.1
(-3) 		25.2
(1.9) 		15.2
(-1.6) 		15.1
(-1.6) 		28.5
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.9
(-3)
A 		2.9
(-3)
A 		11.1
(3)
A 		3.8
(-2.3)
A 		8
B 0.5
(-3)
A 		1.3
(-0.5)
A 		1.5
(0.2)
A 		2.4
(3)
A 		2
C 1.1
(-3)
A 		3.6
(3)
A 		1.1
(-3)
A 		1.2
(-2.8)
A 		3
avr 1.5
(-3) 		2.6
(-0.9) 		4.6
(3) 		2.5
(-1.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-3)
A 		6.1
(0)
A 		10.4
(2.3)
A 		1.9
(-2.2)
A 		11.7
(3)
A 		5.6
(-0.2)
A 		11
B 5.4
(0.2)
A 		0.8
(-2.9)
A 		1.5
(-2.4)
A 		0.6
(-3)
A 		1
(-2.7)
A 		9.6
(3)
A 		9
C 7.2
(0.2)
A 		4.2
(-1.4)
A 		5.5
(-0.7)
A 		7.2
(0.2)
A 		1.4
(-3)
A 		12.2
(3)
A 		11
avr 4.3
(-1.9) 		3.7
(-2.5) 		5.8
(-0.4) 		3.2
(-3) 		4.7
(-1.5) 		9.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14549
Sequence Type Exemplar sequence
Representative Public ID C43D7.2 NCBI
Target Description C43D7.2 /REP_DB=WormBase Gene ID /WP=CE18547 /TR=Q9XVB8 /GB=CAB03963.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075365 NCBI Caenorhabditis elegans C43D7.2 (C43D7.2) mRNA, complete cds. 11/11 None
SNAP00000010483 ENSEMBL cdna:SNAP chromosome:CEL140:V:19332213:19343742:1 11/11 None
GENEFINDER00000010491 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19332213:19333293:1 11/11 None
C43D7.2 ENSEMBL cdna:known chromosome:CEL140:V:19332213:19333246:1 gene:C43D7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19332212-19333228(+) 93.61 100.0
Public Domain and Genome References
Gene Title
Ensembl C43D7.2
Entrez Gene 180268 Entrez gene
SwissProt Q9XVB8 EMBL-EBI
WormBase CE18547 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03963 Hypothetical protein C43D7.2 [Caenorhabditis elegans] ref|NP_507766.1| C43D7.2 [Caenorhabditis elegans] 1.0E-166
blast CAB03963 Hypothetical protein C43D7.2 [Caenorhabditis elegans] ref|NP_507766.1| C43D7.2 [Caenorhabditis elegans] 1.0E-159
blast CAB03963 Hypothetical protein C43D7.2 [Caenorhabditis elegans] ref|NP_507766.1| C43D7.2 [Caenorhabditis elegans] 1.0E-156
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 7.0E-78
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 8.0E-78
blast CAE53731 Hypothetical protein C43D7.9 [Caenorhabditis elegans] ref|NP_001023705.1| C43D7.9 [Caenorhabditis elegans] 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-5
Sequence
Target Sequence 
>C. ELEGANS:179367_AT
ggaagtcggttcatgaagctcttgacggcctggattgctctaggacagggctggaagtcc
agtctcagaatagatacctccagaaaattatcaataaattctccaaaagagatcttgatc
tgatcgtatccagctccacttggtatcatccaatcttgagctcaaaccgcaaatacttaa
cacttaccgccggctttacagacctactctgtgtgaattgtaaatatttaatcgtgcaac
aaccagtcactgcacgagacttgaacttgatgctaaaacactggataaaaggagcatatt
tatcagttcaccagctagaggtcgcagtcaattctcgaataagatttgatgacgttttca
aaaacgtggagtacacggagatatgtatccttgaagaaatgtgggcagcggggatcaatt
tgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTCGGTTCATGAAGCTCTTGA 680 531 338 Antisense
TGACGGCCTGGATTGCTCTAGGACA 337 569 360 Antisense
TCGTATCCAGCTCCACTTGGTATCA 115 603 461 Antisense
GGTATCATCCAATCTTGAGCTCAAA 407 505 479 Antisense
TGAGCTCAAACCGCAAATACTTAAC 52 569 494 Antisense
TAACACTTACCGCCGGCTTTACAGA 672 639 515 Antisense
TAATCGTGCAACAACCAGTCACTGC 277 635 566 Antisense
GTCACTGCACGAGACTTGAACTTGA 632 465 583 Antisense
GGAGCATATTTATCAGTTCACCAGC 184 521 628 Antisense
GTTCACCAGCTAGAGGTCGCAGTCA 377 445 643 Antisense
GTGGGCAGCGGGGATCAATTTGAAC 237 489 738 Antisense
Sequence Source Affymetrix Proprietary Database