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[179364_at]

Description F28B1.5 /REP_DB=WormBase Gene ID /WP=CE15917 /TR=O45415 /GB=CAB04212.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 39.5
(-1)
A 		27.1
(-1.7)
A 		3.9
(-3)
A 		110
(3)
A 		106
B 5
(-3)
A 		49.2
(3)
A 		6.4
(-2.8)
A 		15
(-1.6)
A 		44
C 42.8
(-0.1)
A 		4.4
(-2.9)
A 		3.4
(-3)
A 		84.7
(3)
A 		81
avr 29.1
(-0.7) 		26.9
(-1) 		4.6
(-3) 		69.9
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 6.2
(-2.4)
A 		13.5
(-0.7)
A 		28.7
(3)
A 		7.9
(-2)
A 		15.1
(-0.3)
A 		3.8
(-3)
A 		25
B 33.9
(0)
A 		56.9
(2.2)
A 		10.6
(-2.2)
A 		64.9
(3)
A 		2.4
(-3)
A 		14.2
(-1.9)
A 		63
C 18.1
(-0.9)
A 		48.4
(3)
A 		6.9
(-2.4)
A 		8.1
(-2.2)
A 		1.9
(-3)
A 		8.8
(-2.1)
A 		47
avr 19.4
(-0.7) 		39.6
(3) 		15.4
(-1.4) 		27
(0.7) 		6.5
(-3) 		8.9
(-2.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.4
(2.3)
A 		5.9
(-1.1)
A 		1
(-3)
A 		16.1
(3)
A 		15
B 1.6
(-2.9)
A 		12.1
(3)
A 		1.5
(-3)
A 		3.2
(-2)
A 		11
C 14.2
(3)
A 		1.3
(-3)
A 		1.2
(-3)
A 		14.3
(3)
A 		13
avr 10.1
(2.3) 		6.4
(0.1) 		1.2
(-3) 		11.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		4.8
(1.4)
A 		6.2
(3)
A 		2
(-1.8)
A 		4.5
(1.1)
A 		0.9
(-3)
A 		5
B 11.8
(0.6)
A 		18.9
(3)
A 		2.6
(-2.5)
A 		17.2
(2.4)
A 		1
(-3)
A 		5.3
(-1.6)
A 		18
C 6.7
(-0.4)
A 		14.8
(3)
A 		1.8
(-2.5)
A 		1.6
(-2.6)
A 		0.6
(-3)
A 		2.9
(-2)
A 		14
avr 6.6
(-0.4) 		12.8
(3) 		3.5
(-2.2) 		6.9
(-0.3) 		2
(-3) 		3
(-2.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14306
Sequence Type Exemplar sequence
Representative Public ID F28B1.5 NCBI
Target Description F28B1.5 /REP_DB=WormBase Gene ID /WP=CE15917 /TR=O45415 /GB=CAB04212.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074919 NCBI Caenorhabditis elegans F28B1.5 (F28B1.5) mRNA, complete cds. 11/11 None
SNAP00000006328 ENSEMBL cdna:SNAP chromosome:CEL140:V:17058174:17062497:1 11/11 None
GENEFINDER00000006335 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17054588:17062497:1 11/11 None
F28B1.5 ENSEMBL cdna:known chromosome:CEL140:V:17059713:17062497:1 gene:F28B1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17059712-17062497(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28B1.5
Entrez Gene 185042 Entrez gene
SwissProt O45415 EMBL-EBI
WormBase CE15917 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04212 Hypothetical protein F28B1.5 [Caenorhabditis elegans] ref|NP_507320.1| F28B1.5 [Caenorhabditis elegans] 0.0
blast CAB04210 Hypothetical protein F28B1.3 [Caenorhabditis elegans] ref|NP_507318.1| F28B1.3 [Caenorhabditis elegans] 0.0
blast CAB04211 Hypothetical protein F28B1.4 [Caenorhabditis elegans] ref|NP_507319.1| F28B1.4 [Caenorhabditis elegans] 1.0E-172
blast CAB04210 Hypothetical protein F28B1.3 [Caenorhabditis elegans] ref|NP_507318.1| F28B1.3 [Caenorhabditis elegans] 1.0E-152
blast CAB04211 Hypothetical protein F28B1.4 [Caenorhabditis elegans] ref|NP_507319.1| F28B1.4 [Caenorhabditis elegans] 1.0E-126
blast CAB04210 Hypothetical protein F28B1.3 [Caenorhabditis elegans] ref|NP_507318.1| F28B1.3 [Caenorhabditis elegans] 8.0E-71
Sequence
Target Sequence 
>C. ELEGANS:179364_AT
taactttttcctgctctttatcagaaatcccgagactccaattattttccgtcgtttcaa
cgcgggtacaccgaaaaccgagcaaatcccattgacagatttgatatgtgctcaggactt
tgacaagttctattggcaccacagggaagtgaagataggcgaaacgtttgaggcgacact
cgtcagcgatgaagagtgcggctgtgaagagagggagtcttattatggtattgaaagaac
agggcagtgcaatttgtatgagtacacctgcccgaacaactcctatttgttccgcatgga
agactatggcagcattggcgtcggcgatgattacggtctcatatcgtatcatccatggaa
agtgcaaattgctgagaaaacatgtgtaaactccaaagtatattacaatggatatgaaat
agattccatgtattcccgatgcgtcatcccagaggccgaaaatcctaaattcgacttcac
tgatcgtatcgatgtgcaatgctccccgtcgccagctacaaccgcattgaacaacatctc
tgactggcaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTTTTTCCTGCTCTTTATCAGA 156 639 1467 Antisense
ATCCCGAGACTCCAATTATTTTCCG 215 39 1493 Antisense
AGGCGACACTCGTCAGCGATGAAGA 584 53 1637 Antisense
TTTGTATGAGTACACCTGCCCGAAC 459 665 1719 Antisense
CAACTCCTATTTGTTCCGCATGGAA 287 185 1743 Antisense
TGGCGTCGGCGATGATTACGGTCTC 627 543 1782 Antisense
GGTCTCATATCGTATCATCCATGGA 21 503 1801 Antisense
TAGATTCCATGTATTCCCGATGCGT 165 653 1886 Antisense
GATCGTATCGATGTGCAATGCTCCC 116 419 1948 Antisense
GCCAGCTACAACCGCATTGAACAAC 363 279 1977 Antisense
GAACAACATCTCTGACTGGCAATGG 205 353 1995 Antisense
Sequence Source Affymetrix Proprietary Database