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[179363_at]

Description W07G1.5 /REP_DB=WormBase Gene ID /WP=CE24039 /TR=Q9XUK0 /GB=CAB04937.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5
(-2.6)
A 		6.6
(-2.3)
A 		2.8
(-3)
A 		37.6
(3)
A 		35
B 3.5
(-1.6)
A 		2.6
(-2.4)
A 		1.9
(-3)
A 		8.9
(3)
A 		7
C 8.8
(3)
A 		2.6
(-2.5)
A 		2
(-3)
A 		4
(-1.2)
A 		7
avr 5.8
(-1.5) 		3.9
(-2.3) 		2.2
(-3) 		16.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.6
(1.3)
A 		5.6
(0.4)
A 		6.6
(1.3)
A 		5.4
(0.2)
A 		8.5
(3)
A 		1.8
(-3)
A 		7
B 4.8
(-2.1)
A 		2.3
(-3)
A 		2.3
(-3)
A 		19.1
(3)
A 		3.7
(-2.5)
A 		4.3
(-2.3)
A 		17
C 20.5
(3)
A 		2.4
(-3)
A 		12.9
(0.5)
A 		2.9
(-2.8)
A 		3.5
(-2.6)
A 		5.3
(-2)
A 		18
avr 10.6
(3) 		3.4
(-3) 		7.3
(0.3) 		9.1
(1.8) 		5.2
(-1.5) 		3.8
(-2.7) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.8
(-1.6)
A 		1.4
(-2.1)
A 		0.7
(-3)
A 		5.5
(3)
A 		5
B 1.1
(-0.2)
A 		0.6
(-2.2)
A 		0.4
(-3)
A 		1.9
(3)
A 		2
C 2.9
(3)
A 		0.8
(-2.7)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2
avr 1.9
(0.7) 		0.9
(-2.1) 		0.6
(-3) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-0.8)
A 		2
(1.4)
A 		1.4
(-0.3)
A 		1.4
(-0.3)
A 		2.6
(3)
A 		0.4
(-3)
A 		2
B 1.7
(-1.5)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		5
(3)
A 		1.5
(-1.8)
A 		1.6
(-1.6)
A 		4
C 7.6
(3)
A 		0.7
(-2.9)
A 		3.3
(-0.7)
A 		0.6
(-3)
A 		1.1
(-2.6)
A 		1.8
(-2)
A 		7
avr 3.5
(3) 		1.1
(-3) 		1.8
(-1.3) 		2.3
(-0) 		1.7
(-1.5) 		1.3
(-2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179363_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4035
Sequence Type Exemplar sequence
Representative Public ID W07G1.5 NCBI
Target Description W07G1.5 /REP_DB=WormBase Gene ID /WP=CE24039 /TR=Q9XUK0 /GB=CAB04937.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027228(11), NM_001027227(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027228 NCBI Caenorhabditis elegans W07G1.5b (W07G1.5) mRNA, complete cds. 11/11 None
NM_001027227 NCBI Caenorhabditis elegans W07G1.5a (W07G1.5) mRNA, complete cds. 9/11 None
SNAP00000025662 ENSEMBL cdna:SNAP chromosome:CEL140:II:13960772:13964330:-1 10/11 None
GENEFINDER00000025684 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13959131:13962272:-1 11/11 None
W07G1.5b ENSEMBL cdna:known chromosome:CEL140:II:13959131:13962309:-1 gene:W07G1.5 10/11 None
W07G1.5a ENSEMBL cdna:known chromosome:CEL140:II:13959131:13962272:-1 gene:W07G1.5 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13959127-13962269(-) 100.0 100.0
Public Domain and Genome References
Ensembl W07G1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10809 Hypothetical protein W07G1.5b [Caenorhabditis elegans] ref|NP_001022399.1| W07G1.5b [Caenorhabditis elegans] 1.0E-169
blast CAB04937 Hypothetical protein W07G1.5a [Caenorhabditis elegans] ref|NP_001022398.1| W07G1.5a [Caenorhabditis elegans] 1.0E-163
blast CAB04937 Hypothetical protein W07G1.5a [Caenorhabditis elegans] ref|NP_001022398.1| W07G1.5a [Caenorhabditis elegans] 1.0E-160
blast CAH10809 Hypothetical protein W07G1.5b [Caenorhabditis elegans] ref|NP_001022399.1| W07G1.5b [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR003533 EMBL-EBI Doublecortin 8.5E-27
Pfam IPR003533 EMBL-EBI Doublecortin 1.0E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022399.1 1 244-266
NP_001022398.1 1 244-266
W07G1.5b 1 244-266
W07G1.5a 1 244-266
SNAP00000025662 1 193-215
GENEFINDER00000025684 1 244-266
Sequence
Target Sequence 
>C. ELEGANS:179363_AT
gagagacgcaaatccagctcgtccaaacgtcaatggagcttcaaatgctccgaagaagtt
tgatggagcacgaccgaaggctccaccagcaagacagacgattccaaaacctaagaagat
ccttacaacgtctacaaccaacaaaaaaccaccaacaccaaagcgaaaagtatccaaaaa
agtgctgggcgctgctgcagcggccggcgttacagttgtcggagcagctgcaattggagc
cgtggctgccgccaagcgatcaacgccgaagcctattccgacagctgtatcggatgtttc
cacagcttcatcgattcctataccgaatgtgacaggtgcagctgagattctggagttccc
ggaggaagaaaagaaaatcgatatggcaactatacatcggaccccaacgcctccagtggt
cgcgtcgaggccagcgactgcgaaggctccggggacacctgcaaacaggtcagcgactgc
gttggaggctaagagtgtatcacaattttccggatccactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGACGCAAATCCAGCTCGTCCA 525 395 561 Antisense
GCTCCACCAGCAAGACAGACGATTC 9 299 640 Antisense
GAAGATCCTTACAACGTCTACAACC 309 337 675 Antisense
CGGCCGGCGTTACAGTTGTCGGAGC 323 197 761 Antisense
GAGCAGCTGCAATTGGAGCCGTGGC 142 389 782 Antisense
GAAGCCTATTCCGACAGCTGTATCG 56 345 828 Antisense
GTATCGGATGTTTCCACAGCTTCAT 291 455 847 Antisense
ACAGCTTCATCGATTCCTATACCGA 368 109 862 Antisense
ATGGCAACTATACATCGGACCCCAA 319 53 943 Antisense
AGGTCAGCGACTGCGTTGGAGGCTA 556 57 1027 Antisense
GTATCACAATTTTCCGGATCCACTG 82 455 1057 Antisense
Sequence Source Affymetrix Proprietary Database