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[179362_at]

Description F17A2.9 /REP_DB=WormBase Gene ID /WP=CE15862 /TR=O17822 /GB=CAA92160.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 04      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 27.9
(-2)
A 		5.4
(-3)
A 		21.3
(-2.3)
A 		146.1
(3)
A 		141
B 22.8
(-2.4)
A 		10.7
(-3)
A 		22.5
(-2.4)
A 		126.1
(3)
P 		115
C 58.6
(-0.5)
A 		13.5
(-3)
A 		15.9
(-2.9)
A 		120.6
(3)
P 		107
avr 36.4
(-1.7) 		9.9
(-3) 		19.9
(-2.5) 		130.9
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 11.8
(-1.7)
A 		5
(-2.8)
A 		26.9
(0.8)
A 		3.7
(-3)
A 		40.7
(3)
A 		7.9
(-2.3)
A 		37
B 19.3
(0.6)
A 		29.7
(3)
A 		3.2
(-3)
A 		23.6
(1.6)
A 		24.7
(1.9)
A 		3.6
(-2.9)
A 		27
C 2.3
(-3)
A 		43.4
(3)
A 		24.5
(0.2)
A 		2.8
(-2.9)
A 		28.4
(0.8)
A 		20.9
(-0.3)
A 		41
avr 11.1
(-2.7) 		26
(1.5) 		18.2
(-0.7) 		10
(-3) 		31.3
(3) 		10.8
(-2.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 10.1
(-0.4)
A 		1.2
(-3)
A 		5.6
(-1.7)
A 		21.4
(3)
A 		20
B 7.3
(-1.8)
A 		2.6
(-3)
A 		5.2
(-2.4)
A 		26.9
(3)
P 		24
C 19.4
(2.7)
A 		3.9
(-3)
A 		5.6
(-2.4)
A 		20.3
(3)
P 		16
avr 12.3
(-0.1) 		2.6
(-3) 		5.5
(-2.1) 		22.9
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.2
(-2.4)
A 		1.8
(-2.6)
A 		5.9
(-0.4)
A 		1
(-3)
A 		12.3
(3)
A 		1.9
(-2.5)
A 		11
B 6.7
(0.8)
A 		9.9
(2.9)
A 		0.8
(-3)
A 		6.2
(0.5)
A 		10
(3)
A 		1.4
(-2.6)
A 		9
C 0.8
(-2.9)
A 		13.2
(3)
A 		6.2
(-0.3)
A 		0.6
(-3)
A 		9.2
(1.1)
A 		7
(0)
A 		13
avr 3.2
(-2.5) 		8.3
(1.3) 		4.3
(-1.7) 		2.6
(-3) 		10.5
(3) 		3.4
(-2.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179362_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17286
Sequence Type Exemplar sequence
Representative Public ID F17A2.9 NCBI
Target Description F17A2.9 /REP_DB=WormBase Gene ID /WP=CE15862 /TR=O17822 /GB=CAA92160.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077666 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-48) (srd-48) mRNA, complete cds. 11/11 None
GENEFINDER00000014142 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12336483:12339936:1 11/11 None
F17A2.9 ENSEMBL cdna:known chromosome:CEL140:X:12336029:12337673:1 gene:F17A2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12336028-12337673(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-48
Ensembl F17A2.9
Entrez Gene 184605 Entrez gene
SwissProt O17822 EMBL-EBI
WormBase CE15862 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92160 Hypothetical protein F17A2.9 [Caenorhabditis elegans] ref|NP_510067.1| Serpentine Receptor, class D (delta) family member (srd-48) [Caenorhabditis elegans] sp|O17822|SRD48_CAEEL Serpentine receptor class delta-48 (Protein srd-48) 1.0E-178
blast CAA92160 Hypothetical protein F17A2.9 [Caenorhabditis elegans] ref|NP_510067.1| Serpentine Receptor, class D (delta) family member (srd-48) [Caenorhabditis elegans] sp|O17822|SRD48_CAEEL Serpentine receptor class delta-48 (Protein srd-48) 1.0E-109
blast CAA92162 Hypothetical protein F17A2.11 [Caenorhabditis elegans] ref|NP_510066.1| Serpentine Receptor, class D (delta) family member (srd-47) [Caenorhabditis elegans] sp|Q19507|SRD47_CAEEL Serpentine receptor class delta-47 (Protein srd-47) 3.0E-93
blast CAA92161 Hypothetical protein F17A2.10 [Caenorhabditis elegans] ref|NP_510065.1| Serpentine Receptor, class D (delta) family member (srd-46) [Caenorhabditis elegans] sp|Q19508|SRD46_CAEEL Serpentine receptor class delta-46 (Protein srd-46) 2.0E-80
blast CAA92162 Hypothetical protein F17A2.11 [Caenorhabditis elegans] ref|NP_510066.1| Serpentine Receptor, class D (delta) family member (srd-47) [Caenorhabditis elegans] sp|Q19507|SRD47_CAEEL Serpentine receptor class delta-47 (Protein srd-47) 1.0E-51
blast CAA92161 Hypothetical protein F17A2.10 [Caenorhabditis elegans] ref|NP_510065.1| Serpentine Receptor, class D (delta) family member (srd-46) [Caenorhabditis elegans] sp|Q19508|SRD46_CAEEL Serpentine receptor class delta-46 (Protein srd-46) 1.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510067.1 7 10-29,42-64,84-106,127-149,182-204,235-257,267-289
F17A2.9 7 10-29,42-64,84-106,127-149,182-204,235-257,267-289
GENEFINDER00000014142 8 28-50,83-105,156-173,183-205,218-240,255-274,295-317,355-372
Sequence
Target Sequence 
>C. ELEGANS:179362_AT
aatttccagttttcttctcactgtcataatttttggatctgtatttttgctcccgcctgc
tggattctttatacgaaaaaaaattattcgatgcattaactcaacttctgattcagcatc
agttggccaaaaatttcaacgtcgaagttttattaatggactaactcttcaatcgtttct
ccctcttgtatgtatctgccctatttttgcatgctactttgttgtatcgcggacaaaaac
agacctgccttttgagcaacatatacttccagtgctagtgatgctacctacattgtttga
tccgtatatcatcttatactccgttactccctatcgaaaacaaattaggacctggctcgg
aatgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCCAGTTTTCTTCTCACTGTC 148 175 555 Antisense
TTTGGATCTGTATTTTTGCTCCCGC 269 667 586 Antisense
CCGCCTGCTGGATTCTTTATACGAA 445 261 607 Antisense
GGACTAACTCTTCAATCGTTTCTCC 349 523 712 Antisense
GTATCTGCCCTATTTTTGCATGCTA 356 455 746 Antisense
GCATGCTACTTTGTTGTATCGCGGA 84 311 763 Antisense
AACAGACCTGCCTTTTGAGCAACAT 472 137 792 Antisense
ACTTCCAGTGCTAGTGATGCTACCT 668 103 819 Antisense
GATGCTACCTACATTGTTTGATCCG 129 413 834 Antisense
ATATCATCTTATACTCCGTTACTCC 50 21 860 Antisense
AATTAGGACCTGGCTCGGAATGACG 208 175 897 Antisense
Sequence Source Affymetrix Proprietary Database