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[179359_at]

Description W01D2.5 /REP_DB=WormBase Gene ID /WP=CE20128 /TR=Q9XU63 /GB=CAB05639.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 95      6grp_total > 49      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 699
1 2 3 4 range
A 817
(2.2)
P 		326
(-2.5)
P 		277.4
(-3)
P 		900.9
(3)
P 		624
B 733.2
(0.7)
P 		433.1
(-2.2)
P 		348.5
(-3)
P 		976.6
(3)
P 		628
C 818.5
(2.7)
P 		397.8
(-2.3)
P 		333.9
(-3)
P 		845.6
(3)
P 		512
avr 789.6
(1.8) 		385.6
(-2.3) 		319.9
(-3) 		907.7
(3) 		588

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 722
1 2 3 4 5 6 range
A 781
(2)
P 		471.6
(-1.9)
P 		424.1
(-2.5)
P 		388.4
(-3)
P 		862.3
(3)
P 		823.2
(2.5)
P 		474
B 851.1
(0.3)
P 		535.2
(-3)
P 		545.6
(-2.9)
P 		572.4
(-2.6)
P 		890.2
(0.7)
P 		1110.7
(3)
P 		576
C 950.1
(3)
P 		648.7
(-1)
P 		493.8
(-3)
P 		497.1
(-3)
P 		772.4
(0.7)
P 		951.6
(3)
P 		458
avr 860.7
(1.7) 		551.8
(-2.2) 		487.8
(-3) 		486
(-3) 		841.6
(1.5) 		961.8
(3) 		476
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 297.5
(3)
P 		70.8
(-3)
P 		72.5
(-3)
P 		131.9
(-1.4)
P 		227
B 233.8
(3)
P 		107
(-2)
P 		80.8
(-3)
P 		208.1
(2)
P 		153
C 270.9
(3)
P 		114.4
(-3)
P 		116.4
(-2.9)
P 		142.6
(-1.9)
P 		157
avr 267.4
(3) 		97.4
(-2.7) 		89.9
(-3) 		160.9
(-0.6) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 144
(-1.2)
P 		167.7
(-0.3)
P 		92.4
(-3)
P 		98.5
(-2.8)
P 		260.2
(3)
P 		200.4
(0.9)
P 		168
B 296.2
(0.5)
P 		178.2
(-2)
P 		132.5
(-3)
P 		151.6
(-2.6)
P 		361.7
(1.9)
P 		414.2
(3)
P 		282
C 352.2
(3)
P 		198
(-0.7)
P 		125.7
(-2.4)
P 		100
(-3)
P 		249.9
(0.6)
P 		318.5
(2.2)
P 		252
avr 264.1
(1.6) 		181.3
(-1) 		116.9
(-3) 		116.7
(-3) 		290.6
(2.4) 		311
(3) 		194
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3158
Sequence Type Exemplar sequence
Representative Public ID W01D2.5 NCBI
Target Description W01D2.5 /REP_DB=WormBase Gene ID /WP=CE20128 /TR=Q9XU63 /GB=CAB05639.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064670 NCBI Caenorhabditis elegans W01D2.5 (W01D2.5) mRNA, complete cds. 11/11 None
SNAP00000015969 ENSEMBL cdna:SNAP chromosome:CEL140:II:14812923:14814550:1 11/11 None
GENEFINDER00000015973 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14812923:14814592:1 11/11 None
W01D2.5 ENSEMBL cdna:known chromosome:CEL140:II:14812923:14814766:1 gene:W01D2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14812919-14814547(+) 99.9 100.0
Public Domain and Genome References
Gene Title
Ensembl W01D2.5
Entrez Gene 175140 Entrez gene
SwissProt Q9XU63 EMBL-EBI
WormBase CE20128 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05639 Hypothetical protein W01D2.5 [Caenorhabditis elegans] ref|NP_497071.1| W01D2.5 [Caenorhabditis elegans] 0.0
blast CAE60601 Hypothetical protein CBG04238 [Caenorhabditis briggsae] 0.0
blast CAB05639 Hypothetical protein W01D2.5 [Caenorhabditis elegans] ref|NP_497071.1| W01D2.5 [Caenorhabditis elegans] 1.0E-86
blast CAE60601 Hypothetical protein CBG04238 [Caenorhabditis briggsae] 5.0E-84
blast AAA68368 Hypothetical protein C18A3.4a [Caenorhabditis elegans] ref|NP_741003.1| C18A3.4a [Caenorhabditis elegans] 2.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497071.1 6 50-72,85-104,109-131,179-201,211-233,292-314
W01D2.5 6 50-72,85-104,109-131,179-201,211-233,292-314
SNAP00000015969 6 50-72,85-104,109-131,179-201,211-233,292-314
GENEFINDER00000015973 4 263-285,295-317,324-346,375-397
Sequence
Target Sequence 
>C. ELEGANS:179359_AT
agtacgacgacaggccgatcgacttcagatcaccgccgttttgctgtattattccgaaac
taccgactgcgaggtctacagaaaagaacatccgacgactggaatggtgcgtgctccagg
ctccgatcgtccgatccatcatcatcttcctagacgtggtagccgtcgctgaaatgcgag
aggacgctactccatacattagatactcggatatggcatcactttgctcactgctgcttg
cgatcttcggagtacacacattggcgagggttacttcgaacaagctctccgcctactgct
tcatgtcaatgttccggctcgtggatatatcgctgctcttcttctccgcacaacagccga
tgatcttccagaacgtgttgctcagatttaatttgatatcctgcggaccgctactaaatg
ctcaagagaatgcttatttcgtctgcaacttcataatcacctgcgaaatgcttctgctca
gtgtgctcgccacgtggcttttggctccacgtcacaatgcgatgttcgacgcctatcgtc
cgtctatggcactttcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACGACGACAGGCCGATCGACTT 452 61 449 Antisense
ACCGCCGTTTTGCTGTATTATTCCG 490 87 480 Antisense
GAAACTACCGACTGCGAGGTCTACA 339 357 504 Antisense
ATATGGCATCACTTTGCTCACTGCT 652 21 659 Antisense
GCTGCTTGCGATCTTCGGAGTACAC 286 297 681 Antisense
GAGGGTTACTTCGAACAAGCTCTCC 356 401 714 Antisense
TCATGTCAATGTTCCGGCTCGTGGA 546 621 749 Antisense
CTGCGGACCGCTACTAAATGCTCAA 422 237 849 Antisense
TCGTCTGCAACTTCATAATCACCTG 367 605 887 Antisense
TCACCTGCGAAATGCTTCTGCTCAG 72 627 905 Antisense
ATCGTCCGTCTATGGCACTTTCGGA 311 35 983 Antisense
Sequence Source Affymetrix Proprietary Database