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[179358_at]

Description F40D4.1 /REP_DB=WormBase Gene ID /WP=CE19835 /TR=Q9XV29 /GB=CAB04365.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 06      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 19.9
(-1.5)
A 		22.8
(-1.1)
A 		8
(-3)
A 		54.6
(3)
A 		47
B 46.2
(1.1)
A 		2
(-3)
A 		67.4
(3)
P 		26.1
(-0.8)
A 		65
C 42.8
(-1.5)
A 		36.9
(-2.3)
A 		31.3
(-3)
A 		77
(3)
P 		46
avr 36.3
(-0.1) 		20.6
(-3) 		35.6
(-0.2) 		52.6
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 41.9
(2.9)
A 		23.2
(-0.1)
A 		9.1
(-2.4)
A 		5.5
(-3)
A 		42.4
(3)
A 		36.3
(2)
A 		37
B 38.7
(3)
A 		14.3
(-1.1)
A 		16
(-0.8)
A 		3
(-3)
A 		32.3
(1.9)
A 		14
(-1.2)
A 		36
C 24.1
(-0.8)
A 		50.4
(3)
A 		40
(1.5)
A 		8.9
(-3)
A 		11.1
(-2.7)
A 		20.1
(-1.4)
A 		42
avr 34.9
(3) 		29.3
(1.8) 		21.7
(0.3) 		5.8
(-3) 		28.6
(1.7) 		23.5
(0.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.2
(2.2)
A 		4.9
(-0.2)
A 		2.1
(-3)
A 		8
(3)
A 		6
B 14.7
(2.6)
A 		0.5
(-3)
A 		15.6
(3)
P 		5.6
(-1)
A 		15
C 14.2
(3)
A 		10.6
(-3)
A 		10.9
(-2.5)
A 		13
(1)
P 		4
avr 12
(3) 		5.3
(-3) 		9.5
(0.8) 		8.9
(0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.7
(0.3)
A 		8.3
(0.6)
A 		2
(-2.7)
A 		1.4
(-3)
A 		12.8
(3)
A 		8.8
(0.9)
A 		11
B 13.5
(3)
A 		4.7
(-1.2)
A 		3.9
(-1.5)
A 		0.8
(-3)
A 		13.1
(2.8)
A 		5.2
(-0.9)
A 		13
C 8.9
(0.1)
A 		15.4
(3)
A 		10.2
(0.7)
A 		1.8
(-3)
A 		3.6
(-2.2)
A 		6.7
(-0.8)
A 		14
avr 10
(3) 		9.5
(2.7) 		5.4
(-0.2) 		1.3
(-3) 		9.8
(2.9) 		6.9
(0.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13618
Sequence Type Exemplar sequence
Representative Public ID F40D4.1 NCBI
Target Description F40D4.1 /REP_DB=WormBase Gene ID /WP=CE19835 /TR=Q9XV29 /GB=CAB04365.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074947 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-174) (srh-174) mRNA, complete cds. 11/11 A 
SNAP00000026448 ENSEMBL cdna:SNAP chromosome:CEL140:V:17181335:17182580:1 11/11 None
GENEFINDER00000026458 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17181335:17186202:1 11/11 None
F40D4.1 ENSEMBL cdna:known chromosome:CEL140:V:17181335:17182580:1 gene:F40D4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17181334-17182580(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-174
Ensembl F40D4.1
Entrez Gene 185519 Entrez gene
SwissProt Q9XV29 EMBL-EBI
WormBase CE19835 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04365 Hypothetical protein F40D4.1 [Caenorhabditis elegans] ref|NP_507348.1| Serpentine Receptor, class H family member (srh-174) [Caenorhabditis elegans] 0.0
blast CAB04365 Hypothetical protein F40D4.1 [Caenorhabditis elegans] ref|NP_507348.1| Serpentine Receptor, class H family member (srh-174) [Caenorhabditis elegans] 1.0E-179
blast T21162 hypothetical protein F20E11.11 - Caenorhabditis elegans 1.0E-150
blast T21162 hypothetical protein F20E11.11 - Caenorhabditis elegans 1.0E-142
blast CAB60394 Hypothetical protein Y60A3A.6 [Caenorhabditis elegans] ref|NP_507864.2| Serpentine Receptor, class H family member (srh-172) [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-32
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-43
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507348.1 7 15-37,57-79,94-116,137-159,194-216,237-259,274-296
F40D4.1 7 15-37,57-79,94-116,137-159,194-216,237-259,274-296
SNAP00000026448 7 15-37,57-79,94-116,137-159,194-216,237-259,274-296
GENEFINDER00000026458 10 15-37,57-79,94-116,137-159,194-216,237-259,342-361,382-404,462-484,491-513
Sequence
Target Sequence 
>C. ELEGANS:179358_AT
ggaagttctggccgcagaagttggaagcgaaaactatatgttctgtgtaattacgcgttt
tctgcaactttcatagctccagcgtttttagacattcctagtgaagaacaaggaagaacg
tacacttttgaaaaaatcccgagcatccctatcgacgtgccttctcgtcctggttatttt
gtcctattaattgataacccaacctacagtatttgtgttagtctcttagtaattatagtt
tgtccacaaattggtatagtcgttttgttcatcttccgttttatcgttaacacaaaatca
cattctcgagccacacagcgtttacttcttcacttcttcatagcgatgtgtattcaactg
tctattccatttttggtcatcttcttgccggctgcctttatagtgtacgcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTTCTGGCCGCAGAAGTTGGA 349 531 388 Antisense
GTGTAATTACGCGTTTTCTGCAACT 442 485 432 Antisense
TTTCTGCAACTTTCATAGCTCCAGC 693 669 446 Antisense
TGAAAAAATCCCGAGCATCCCTATC 680 571 516 Antisense
TTCTCGTCCTGGTTATTTTGTCCTA 402 693 549 Antisense
GATAACCCAACCTACAGTATTTGTG 217 423 580 Antisense
TCGTTTTGTTCATCTTCCGTTTTAT 199 605 647 Antisense
CATCTTCCGTTTTATCGTTAACACA 24 213 657 Antisense
TACTTCTTCACTTCTTCATAGCGAT 304 645 710 Antisense
GTGTATTCAACTGTCTATTCCATTT 111 487 735 Antisense
CGGCTGCCTTTATAGTGTACGCGAT 27 241 776 Antisense
Sequence Source Affymetrix Proprietary Database