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[179357_at]

Description F49B2.6 /REP_DB=WormBase Gene ID /WP=CE16077 /TR=O45540 /GB=CAB04428.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 82.9
(3)
P 		32.7
(-3)
A 		46.8
(-1.3)
A 		67.2
(1.1)
A 		50
B 146.6
(3)
P 		70.6
(-1.2)
A 		38
(-3)
A 		55.7
(-2)
A 		109
C 114.8
(3)
P 		91.5
(1.3)
A 		34.8
(-3)
A 		66.2
(-0.6)
A 		80
avr 114.8
(3) 		64.9
(-1) 		39.9
(-3) 		63
(-1.1) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 15.1
(-3)
A 		47.2
(2.1)
A 		48.4
(2.3)
A 		20.2
(-2.2)
A 		52.5
(3)
A 		38.3
(0.7)
A 		37
B 47.1
(1.4)
A 		62
(3)
A 		7.3
(-3)
A 		45.4
(1.2)
A 		31.2
(-0.4)
A 		34.4
(-0)
A 		55
C 65.9
(3)
A 		40.7
(-0.6)
A 		63.4
(2.6)
A 		38.3
(-0.9)
A 		49.1
(0.6)
P 		23.7
(-3)
A 		42
avr 42.7
(0.6) 		50
(3) 		39.7
(-0.5) 		34.6
(-2.2) 		44.3
(1.1) 		32.1
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 30.2
(3)
P 		7.1
(-3)
A 		12.2
(-1.7)
A 		9.8
(-2.3)
A 		23
B 46.8
(3)
P 		17.4
(-1.6)
A 		8.8
(-3)
A 		11.9
(-2.5)
A 		38
C 38
(3)
P 		26.3
(0.4)
A 		12.1
(-2.8)
A 		11.2
(-3)
A 		27
avr 38.3
(3) 		16.9
(-1.7) 		11
(-3) 		11
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.8
(-3)
A 		16.8
(3)
A 		10.5
(0.3)
A 		5.1
(-2)
A 		15.8
(2.6)
A 		9.3
(-0.2)
A 		14
B 16.4
(1.7)
A 		20.6
(3)
A 		1.8
(-3)
A 		12
(0.3)
A 		12.7
(0.5)
A 		12.8
(0.5)
A 		19
C 24.4
(3)
A 		12.4
(-1.3)
A 		16.1
(0)
A 		7.7
(-3)
A 		15.9
(-0.1)
P 		7.9
(-2.9)
A 		17
avr 14.5
(1.5) 		16.6
(3) 		9.5
(-2.1) 		8.3
(-3) 		14.8
(1.7) 		10
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.488
Sequence Type Exemplar sequence
Representative Public ID F49B2.6 NCBI
Target Description F49B2.6 /REP_DB=WormBase Gene ID /WP=CE16077 /TR=O45540 /GB=CAB04428.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061102 NCBI Caenorhabditis elegans F49B2.6 (F49B2.6) mRNA, complete cds. 11/11 None
F49B2.6 ENSEMBL cdna:known chromosome:CEL140:I:14338386:14341227:1 gene:F49B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14338316-14341158(+) 65.63 100.0
Public Domain and Genome References
Gene Title
Ensembl F49B2.6
Entrez Gene 173297 Entrez gene
SwissProt O45540 EMBL-EBI
WormBase CE16077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04428 Hypothetical protein F49B2.6 [Caenorhabditis elegans] ref|NP_493503.1| F49B2.6 [Caenorhabditis elegans] 7.0E-91
blast CAE64123 Hypothetical protein CBG08739 [Caenorhabditis briggsae] 9.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 7.2E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493503.1 2 157-179,239-261
F49B2.6 2 157-179,239-261
Sequence
Target Sequence 
>C. ELEGANS:179357_AT
cctcccgtctttcttaaaatctgatgctccgatggatgctgacaactcgactctgatcaa
tcttcgaatagctggtgccgagctagggagtagtgttgagctggaggacactacggtggg
gagtgaggaagaggagatggtagaagagggagatgaggaggaggatgaggttgaagaaaa
gtcagaagaaagtgaggaggaagaggagaagatcaagaagaagagaagggggaagaagga
gaagaaggagaaggtcgtagaggaggtagaggaagaggaagagcatgaagaaactgagga
gcaggaagaggagcagagtggagaaaagtttgtcaaggctaataaggagtgcaccaacat
cacgtggtactcctcacgacttccgcgcaccgctgaaccaatcgactacgacttgaccct
ccacccgaatcttacgaatggagaggttgaggcatcggtctctatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCCCGTCTTTCTTAAAATCTGAT 381 267 834 Antisense
ATCTGATGCTCCGATGGATGCTGAC 455 29 852 Antisense
GACAACTCGACTCTGATCAATCTTC 9 367 874 Antisense
GATCAATCTTCGAATAGCTGGTGCC 152 423 888 Antisense
GCTGGTGCCGAGCTAGGGAGTAGTG 544 291 904 Antisense
GTTGAGCTGGAGGACACTACGGTGG 204 437 928 Antisense
TAAGGAGTGCACCAACATCACGTGG 169 637 1176 Antisense
CAACATCACGTGGTACTCCTCACGA 603 187 1188 Antisense
ACCAATCGACTACGACTTGACCCTC 270 85 1230 Antisense
CCTCCACCCGAATCTTACGAATGGA 4 267 1251 Antisense
GAGGTTGAGGCATCGGTCTCTATCA 150 403 1276 Antisense
Sequence Source Affymetrix Proprietary Database