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[179356_at]

Description F08H9.2 /REP_DB=WormBase Gene ID /WP=CE09266 /TR=Q19225 /GB=CAB01144.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 50.2
(-3)
A 		52.6
(-1.9)
A 		63.9
(3)
A 		55.1
(-0.9)
P 		14
B 35.2
(-3)
A 		35.7
(-2.9)
A 		40.6
(-1.7)
A 		59.2
(3)
A 		24
C 57.4
(0.4)
A 		97
(3)
A 		4
(-3)
A 		49.6
(-0.1)
A 		93
avr 47.6
(-0.3) 		61.8
(3) 		36.2
(-3) 		54.6
(1.3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 37.3
(-2.8)
A 		52.4
(-2.4)
A 		27.4
(-3)
A 		33.9
(-2.8)
A 		113.9
(-1)
P 		286.6
(3)
P 		259
B 9.3
(-2.8)
A 		13.9
(-2.6)
A 		46.9
(-1)
A 		5.2
(-3)
A 		100.4
(1.5)
P 		133.1
(3)
P 		128
C 5.1
(-3)
A 		36.3
(-2.1)
A 		8.2
(-2.9)
A 		49.9
(-1.6)
A 		203.8
(3)
P 		190.9
(2.6)
P 		199
avr 17.2
(-3) 		34.2
(-2.5) 		27.5
(-2.7) 		29.7
(-2.6) 		139.4
(0.9) 		203.5
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 18.3
(3)
A 		11.4
(-1.1)
A 		16.7
(2.1)
A 		8.1
(-3)
P 		10
B 11.2
(0.8)
A 		8.8
(-3)
A 		9.4
(-2.1)
A 		12.6
(3)
A 		4
C 19
(1)
A 		27.9
(3)
A 		1.4
(-3)
A 		8.4
(-1.4)
A 		27
avr 16.2
(3) 		16
(2.8) 		9.2
(-3) 		9.7
(-2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 6.9
(-2.9)
A 		18.6
(-1.8)
A 		6
(-3)
A 		8.6
(-2.8)
A 		34.4
(-0.3)
P 		69.8
(3)
P 		64
B 3.2
(-2.8)
A 		4.6
(-2.6)
A 		11.4
(-1.8)
A 		1.4
(-3)
A 		40.8
(1.9)
P 		49.6
(3)
P 		48
C 1.9
(-3)
A 		11.1
(-2.1)
A 		2.1
(-3)
A 		10
(-2.2)
A 		66
(3)
P 		63.9
(2.8)
P 		64
avr 4
(-3) 		11.4
(-2.2) 		6.5
(-2.7) 		6.7
(-2.7) 		47.1
(1.5) 		61.1
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13242
Sequence Type Exemplar sequence
Representative Public ID F08H9.2 NCBI
Target Description F08H9.2 /REP_DB=WormBase Gene ID /WP=CE09266 /TR=Q19225 /GB=CAB01144.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074183 NCBI Caenorhabditis elegans F08H9.2 (F08H9.2) mRNA, complete cds. 11/11 None
SNAP00000029727 ENSEMBL cdna:SNAP chromosome:CEL140:V:14463254:14463646:1 11/11 None
F08H9.2 ENSEMBL cdna:known chromosome:CEL140:V:14463254:14463646:1 gene:F08H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14463253-14463646(+) 91.09 100.0
Public Domain and Genome References
Gene Title
Ensembl F08H9.2
Entrez Gene 179950 Entrez gene
SwissProt Q19225 EMBL-EBI
WormBase CE09266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01144 Hypothetical protein F08H9.2 [Caenorhabditis elegans] ref|NP_506584.1| F08H9.2 [Caenorhabditis elegans] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179356_AT
gattcaaaaggacgcttcctacccggaaagaaggccaagtctgttgccagcaagtctcgt
tcgagatccagaagccgcagtgttgtgagccgtaagacgacccgtaccaattcgttgact
cgtcgtcgttcatcgacgaaagctccttcgtctgcccgtcaatccagatctcgctcaaga
tctcgctcaagatctcgctccaaatcccgctccacgtcttcccgccgttcccgctctcgc
tcagctcgtcgtgtctcgttcaagcgtggacgtcctgcttcgtttgctatgaagagtcct
gaagagaagacggccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAAAAGGACGCTTCCTACCCG 48 429 49 Antisense
AAGAAGGCCAAGTCTGTTGCCAGCA 209 153 76 Antisense
TCTGTTGCCAGCAAGTCTCGTTCGA 430 607 88 Antisense
TCTCGTTCGAGATCCAGAAGCCGCA 1 603 103 Antisense
AGAAGCCGCAGTGTTGTGAGCCGTA 450 73 118 Antisense
TAAGACGACCCGTACCAATTCGTTG 127 567 141 Antisense
GTTGACTCGTCGTCGTTCATCGACG 650 437 162 Antisense
ATCGACGAAAGCTCCTTCGTCTGCC 260 35 180 Antisense
CGTGTCTCGTTCAAGCGTGGACGTC 149 245 298 Antisense
ACGTCCTGCTTCGTTTGCTATGAAG 234 95 318 Antisense
GAGTCCTGAAGAGAAGACGGCCGCA 341 401 342 Antisense
Sequence Source Affymetrix Proprietary Database