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[179355_at]

Description Y6E2A.9 /REP_DB=WormBase Gene ID /WP=CE16585 /TR=O45976 /GB=CAA15970.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 9.7
(-2.5)
A 		4.8
(-3)
A 		15
(-2)
A 		63.7
(3)
A 		59
B 30.5
(3)
A 		14.1
(-1.2)
A 		9.4
(-2.4)
A 		7.2
(-3)
A 		23
C 2.3
(-3)
A 		19.2
(3)
A 		6.6
(-1.5)
A 		8.3
(-0.9)
A 		17
avr 14.2
(-1.5) 		12.7
(-2.1) 		10.3
(-3) 		26.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 12.1
(-2.7)
A 		10.1
(-3)
A 		25.7
(-0.4)
A 		46
(3)
A 		38.3
(1.7)
A 		24.5
(-0.6)
A 		36
B 8.3
(-2.4)
A 		35.3
(2)
A 		6
(-2.8)
A 		4.7
(-3)
A 		24.5
(0.2)
A 		41.6
(3)
A 		37
C 5.4
(-3)
A 		13.6
(-1.5)
A 		9.1
(-2.3)
A 		13.2
(-1.6)
A 		8.5
(-2.4)
A 		37.9
(3)
A 		33
avr 8.6
(-3) 		19.7
(-0.4) 		13.6
(-1.9) 		21.3
(-0.1) 		23.8
(0.5) 		34.7
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.5
(-1.2)
A 		1
(-3)
A 		3.9
(-0.9)
A 		9.3
(3)
A 		8
B 9.7
(3)
A 		3.5
(-1.5)
A 		2.2
(-2.5)
A 		1.5
(-3)
A 		8
C 0.8
(-3)
A 		5.5
(3)
A 		2.3
(-1.1)
A 		1.4
(-2.2)
A 		5
avr 4.7
(3) 		3.3
(-1.4) 		2.8
(-3) 		4.1
(1.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.2
(-3)
A 		3.6
(-2.1)
A 		5.6
(-0.9)
A 		11.7
(3)
A 		11.6
(2.9)
A 		6
(-0.6)
A 		10
B 2.9
(-2.3)
A 		11.8
(1.4)
A 		1.5
(-2.9)
A 		1.2
(-3)
A 		10
(0.7)
A 		15.5
(3)
A 		14
C 2
(-3)
A 		4.1
(-1.8)
A 		2.3
(-2.8)
A 		2.7
(-2.6)
A 		2.8
(-2.6)
A 		12.7
(3)
A 		11
avr 2.4
(-3) 		6.5
(-0.3) 		3.1
(-2.5) 		5.2
(-1.1) 		8.1
(0.8) 		11.4
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13128
Sequence Type Exemplar sequence
Representative Public ID Y6E2A.9 NCBI
Target Description Y6E2A.9 /REP_DB=WormBase Gene ID /WP=CE16585 /TR=O45976 /GB=CAA15970.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029110(11), NM_001029111(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029110 NCBI Caenorhabditis elegans Y6E2A.9a (Y6E2A.9) mRNA, complete cds. 11/11 None
NM_001029111 NCBI Caenorhabditis elegans Y6E2A.9b (Y6E2A.9) mRNA, complete cds. 11/11 None
SNAP00000013595 ENSEMBL cdna:SNAP chromosome:CEL140:V:15729451:15732794:1 9/11 None
GENEFINDER00000013601 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15729758:15731740:1 11/11 None
Y6E2A.9a ENSEMBL cdna:known chromosome:CEL140:V:15729447:15730915:1 gene:Y6E2A.9 11/11 None
Y6E2A.9b ENSEMBL cdna:known chromosome:CEL140:V:15729451:15730876:1 gene:Y6E2A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15729450-15730915(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y6E2A.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE54921 Hypothetical protein Y6E2A.9a [Caenorhabditis elegans] ref|NP_001024281.1| Y6E2A.9a [Caenorhabditis elegans] 1.0E-175
blast CAE66303 Hypothetical protein CBG11553 [Caenorhabditis briggsae] 1.0E-149
blast CAE54921 Hypothetical protein Y6E2A.9a [Caenorhabditis elegans] ref|NP_001024281.1| Y6E2A.9a [Caenorhabditis elegans] 1.0E-139
blast CAA88076 Hypothetical protein AH6.2 [Caenorhabditis elegans] ref|NP_496040.1| AH6.2 [Caenorhabditis elegans] sp|Q09201|YP22_CAEEL Hypothetical protein AH6.2 in chromosome II 1.0E-124
blast CAE66303 Hypothetical protein CBG11553 [Caenorhabditis briggsae] 1.0E-122
blast CAE54921 Hypothetical protein Y6E2A.9a [Caenorhabditis elegans] ref|NP_001024281.1| Y6E2A.9a [Caenorhabditis elegans] 1.0E-117
blast CAE66303 Hypothetical protein CBG11553 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR004686 EMBL-EBI Tricarboxylate/iron carrier 1.0E-126
Pfam IPR004686 EMBL-EBI Tricarboxylate/iron carrier 8.3E-118
Pfam IPR004686 EMBL-EBI Tricarboxylate/iron carrier 1.0E-126
Pfam IPR004686 EMBL-EBI Tricarboxylate/iron carrier 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024281.1 2 150-172,272-294
NP_001024282.1 2 150-172,177-196
Y6E2A.9a 2 150-172,272-294
Y6E2A.9b 2 150-172,177-196
SNAP00000013595 1 150-172
GENEFINDER00000013601 3 83-105,110-132,210-232
Sequence
Target Sequence 
>C. ELEGANS:179355_AT
agaactaccaatcagcagctactctattcgtatttctgtgctactggagcggctacaacg
gcggctctcggtctgaatatgatggtgaagaatagtcatggattggctggaagattggtt
ccatttgtggctgttgcagttgcaaatgccattaatattccaatggttcgagcaaacgaa
ctttctgagggaattgagctatgtgatgaggacgaccatctcgtcgcaaaatccaagcag
ctggcggctctcgcaattgctcaagtcacactgagccgaattctcatggctatgcctgat
atggttctgagcccggtgatcatgaatcgattcacgcgaaccgcctactacaaagctcgt
ccactagtccaaaagtactccgagatgccgattcagacatttttggcggggattggtctt
tacttcatgacaccgttggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACTACCAATCAGCAGCTACTCT 651 71 442 Antisense
GCTACTCTATTCGTATTTCTGTGCT 153 303 459 Antisense
TGCTACTGGAGCGGCTACAACGGCG 191 561 480 Antisense
GCGGCTCTCGGTCTGAATATGATGG 493 293 502 Antisense
GACCATCTCGTCGCAAAATCCAAGC 651 383 655 Antisense
GGCTCTCGCAATTGCTCAAGTCACA 311 539 687 Antisense
GCCGAATTCTCATGGCTATGCCTGA 501 285 716 Antisense
GGTTCTGAGCCCGGTGATCATGAAT 687 505 744 Antisense
TACTACAAAGCTCGTCCACTAGTCC 510 645 787 Antisense
GTACTCCGAGATGCCGATTCAGACA 637 459 816 Antisense
TCTTTACTTCATGACACCGTTGGGA 3 613 858 Antisense
Sequence Source Affymetrix Proprietary Database