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[179354_s_at]

Description B0513.4 /REP_DB=WormBase Gene ID /WP=CE15560 /TR=O45227 /GB=CAB05116.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 99      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 71.8
(-2.3)
P 		26.2
(-3)
A 		32.5
(-2.9)
A 		417.9
(3)
P 		392
B 100.4
(-2.1)
P 		47.8
(-3)
A 		51.1
(-2.9)
A 		382.2
(3)
P 		334
C 107.3
(-1.7)
P 		73.1
(-2.4)
A 		43.7
(-3)
A 		341.8
(3)
P 		298
avr 93.2
(-2.1) 		49
(-2.9) 		42.4
(-3) 		380.6
(3) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 967
1 2 3 4 5 6 range
A 144
(-2.3)
P 		82.6
(-2.8)
A 		63.2
(-3)
P 		95.8
(-2.7)
M 		572.1
(1.3)
P 		773.7
(3)
P 		711
B 61.3
(-2.9)
P 		73.6
(-2.7)
P 		87.5
(-2.6)
P 		48.7
(-3)
A 		607.5
(3)
P 		493.8
(1.8)
P 		559
C 83.8
(-3)
P 		95.2
(-2.9)
P 		93.7
(-2.9)
A 		98.3
(-2.9)
P 		1016
(3)
P 		578
(0.2)
P 		932
avr 96.4
(-2.9) 		83.8
(-3) 		81.5
(-3) 		80.9
(-3) 		731.9
(3) 		615.2
(1.9) 		651
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 26.1
(-0.8)
P 		5.7
(-3)
A 		8.5
(-2.7)
A 		61.2
(3)
P 		56
B 32
(-1.3)
P 		11.8
(-3)
A 		11.8
(-3)
A 		81.5
(3)
P 		70
C 35.5
(-0.1)
P 		21
(-2.2)
A 		15.2
(-3)
A 		57.6
(3)
P 		42
avr 31.2
(-0.9) 		12.8
(-2.9) 		11.8
(-3) 		66.8
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 26.6
(-2.6)
P 		29.4
(-2.5)
A 		13.8
(-3)
P 		24.3
(-2.6)
M 		172.6
(2.5)
P 		188.4
(3)
P 		175
B 21.3
(-2.8)
P 		24.5
(-2.7)
P 		21.3
(-2.8)
P 		12.9
(-3)
A 		246.8
(3)
P 		184.1
(1.4)
P 		234
C 31
(-2.8)
P 		29
(-2.8)
P 		23.8
(-2.9)
A 		19.8
(-3)
P 		328.8
(3)
P 		193.5
(0.4)
P 		309
avr 26.3
(-2.8) 		27.6
(-2.8) 		19.6
(-3) 		19
(-3) 		249.4
(3) 		188.7
(1.4) 		230
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179354_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9092
Sequence Type Exemplar sequence
Representative Public ID B0513.4 NCBI
Target Description B0513.4 /REP_DB=WormBase Gene ID /WP=CE15560 /TR=O45227 /GB=CAB05116.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070269 NCBI Caenorhabditis elegans B0513.4 (B0513.4) mRNA, complete cds. 11/11 None
SNAP00000026160 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13880125:13881455:1 11/11 None
GENEFINDER00000026171 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13880125:13881455:1 11/11 None
B0513.4 ENSEMBL cdna:known chromosome:CEL140:IV:13880107:13881495:1 gene:B0513.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13880130-13881461(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0513.4
Entrez Gene 178351 Entrez gene
SwissProt O45227 EMBL-EBI
WormBase CE15560 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05116 Hypothetical protein B0513.4 [Caenorhabditis elegans] ref|NP_502670.1| B0513.4 [Caenorhabditis elegans] 1.0E-50
blast CAE74610 Hypothetical protein CBG22399 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:179354_S_AT
caccggctcaatattatccaccagcagcacttaatgataattatgtgtgcacaatccagg
ccaactatggactcttcggacagggcggaaagcattaccgtccaacggtgaactattgcc
aagacacgtacaagaacgattcctgtgataaatgctgcaaaatggccgccagaatccagg
gaactaacatcaaggaggcctccatcatcgggttcaacatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGGCTCAATATTATCCACCAGC 690 199 101 Antisense
ATATTATCCACCAGCAGCACTTAAT 234 19 111 Antisense
CCACCAGCAGCACTTAATGATAATT 287 273 118 Antisense
ATGTGTGCACAATCCAGGCCAACTA 678 49 143 Antisense
GCACAATCCAGGCCAACTATGGACT 535 317 149 Antisense
GACAGGGCGGAAAGCATTACCGTCC 421 367 179 Antisense
CCAAGACACGTACAAGAACGATTCC 280 271 219 Antisense
TAAATGCTGCAAAATGGCCGCCAGA 545 641 249 Antisense
GGCCGCCAGAATCCAGGGAACTAAC 20 539 264 Antisense
GGAACTAACATCAAGGAGGCCTCCA 605 529 280 Antisense
CCTCCATCATCGGGTTCAACATGGT 315 265 299 Antisense
Sequence Source Affymetrix Proprietary Database