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[179353_at]

Description ZK550.5 /REP_DB=WormBase Gene ID /WP=CE16736 /TR=O62514 /GB=CAB05315.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 29.4
(-3)
A 		39.5
(0.3)
A 		47.7
(3)
A 		39.4
(0.3)
A 		18
B 27.5
(-3)
A 		46.7
(0.8)
A 		58.2
(3)
A 		50.4
(1.5)
A 		31
C 37.7
(-3)
A 		91.3
(3)
A 		38
(-3)
A 		42.6
(-2.5)
A 		54
avr 31.5
(-3) 		59.2
(3) 		48
(0.6) 		44.1
(-0.3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 46.9
(-2.3)
A 		18.2
(-2.9)
A 		13.4
(-3)
A 		33.5
(-2.6)
A 		103.7
(-1.1)
P 		292.4
(3)
P 		279
B 24.3
(-2.4)
A 		21
(-2.5)
A 		7
(-3)
A 		49.7
(-1.5)
M 		136
(1.4)
P 		181.5
(3)
P 		175
C 3.1
(-3)
A 		40.3
(-1.5)
A 		36.9
(-1.7)
A 		16.6
(-2.5)
A 		153.6
(3)
P 		137.2
(2.3)
P 		151
avr 24.8
(-2.8) 		26.5
(-2.8) 		19.1
(-3) 		33.3
(-2.5) 		131.1
(0.6) 		203.7
(3) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 10.7
(1.4)
A 		8.6
(-0.5)
A 		12.5
(3)
A 		5.8
(-3)
A 		7
B 8.8
(-3)
A 		11.5
(0.4)
A 		13.5
(3)
A 		10.7
(-0.6)
A 		5
C 12.5
(-1.3)
A 		26.2
(3)
A 		13.2
(-1.1)
A 		7.2
(-3)
A 		19
avr 10.7
(-0.8) 		15.4
(3) 		13.1
(1.2) 		7.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 8.7
(-2.5)
A 		6.5
(-2.7)
A 		2.9
(-3)
A 		8.5
(-2.5)
A 		31.3
(-0.5)
P 		71.2
(3)
P 		68
B 8.4
(-2.4)
A 		7
(-2.5)
A 		1.7
(-3)
A 		13.2
(-2)
M 		55.3
(1.9)
P 		67.7
(3)
P 		66
C 1.1
(-3)
A 		12.3
(-1.6)
A 		9.4
(-2)
A 		3.3
(-2.7)
A 		49.7
(3)
P 		45.9
(2.5)
P 		49
avr 6.1
(-2.9) 		8.6
(-2.6) 		4.7
(-3) 		8.3
(-2.6) 		45.4
(1.3) 		61.6
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179353_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10043
Sequence Type Exemplar sequence
Representative Public ID ZK550.5 NCBI
Target Description ZK550.5 /REP_DB=WormBase Gene ID /WP=CE16736 /TR=O62514 /GB=CAB05315.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070660(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070660 NCBI Caenorhabditis elegans ZK550.5 (ZK550.5) mRNA, complete cds. 11/11 None
ZK550.5 ENSEMBL cdna:known chromosome:CEL140:IV:17257548:17259327:-1 gene:ZK550.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026989 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17257553-17259333(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK550.5
Entrez Gene 191350 Entrez gene
SwissProt O62514 EMBL-EBI
WormBase CE16736 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05315 Hypothetical protein ZK550.5 [Caenorhabditis elegans] ref|NP_503061.1| ZK550.5 [Caenorhabditis elegans] 0.0
blast CAE57413 Hypothetical protein CBG00368 [Caenorhabditis briggsae] 1.0E-119
blast CAE57415 Hypothetical protein CBG00370 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR008775 EMBL-EBI Phytanoyl-CoA dioxygenase 3.7E-73
Sequence
Target Sequence 
>C. ELEGANS:179353_AT
gtggttcgtgatctcatcggatccccagacacccgtatcactgcaatgcacacaatgctc
atcaacaagccaccagacacaggagcactgacgtcacgccatccaatgcatcaggatttg
atctacttcccgtggcgcccagaggagctgactgtctgtgcgtggaccgctatggaaaag
atcaacaagcagaatggatgcttgcaagttgtaccaggaacccaggcacgaggcctacag
gttcacggttacccagagtgggagggtggtgtcaacatggcatactacgcaatcaaggac
tatgacatgtcacttccacgtgaatacgtcgagatggaagctggagacactgtgttcttc
catccatgcttgttccatggatccggtgccaatcgatccgagggattcagaaaggcgatc
tcgtgtcactacgcgaactatgatcatacgaagtacattgatgtcaagggaaccgctcaa
gaggaagccggcaaacagattgaggacatcatccgtaagcatccaaagagatatgccgtg
aaaccgggacaggaggtcactttcgagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTTCGTGATCTCATCGGATCCC 207 489 376 Antisense
AGACACAGGAGCACTGACGTCACGC 218 71 450 Antisense
GTCACGCCATCCAATGCATCAGGAT 591 463 468 Antisense
TCAGGATTTGATCTACTTCCCGTGG 218 621 486 Antisense
AACCCAGGCACGAGGCCTACAGGTT 341 145 594 Antisense
CCTACAGGTTCACGGTTACCCAGAG 312 245 609 Antisense
GACTATGACATGTCACTTCCACGTG 185 371 673 Antisense
CATGCTTGTTCCATGGATCCGGTGC 307 209 740 Antisense
ATCCGGTGCCAATCGATCCGAGGGA 87 3 756 Antisense
GAAAGGCGATCTCGTGTCACTACGC 71 361 785 Antisense
GGGACAGGAGGTCACTTTCGAGCTC 397 495 921 Antisense
Sequence Source Affymetrix Proprietary Database