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[179349_at]

Description T04F8.8 /REP_DB=WormBase Gene ID /WP=CE18927 /TR=Q22168 /GB=CAA91483.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 22      6grp_highest_nonorm > 31      6grp_total > 22      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1284
1 2 3 4 range
A 946.7
(1.5)
P 		1214.7
(3)
P 		1084.5
(2.3)
P 		131.5
(-3)
A 		1083
B 835.3
(1.6)
P 		1085.4
(3)
P 		1087
(3)
P 		17.4
(-3)
A 		1070
C 801.1
(0.6)
P 		1274.2
(2.9)
P 		1301.6
(3)
P 		53.2
(-3)
A 		1248
avr 861
(1.2) 		1191.4
(3) 		1157.7
(2.8) 		67.4
(-3) 		1124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1213
1 2 3 4 5 6 range
A 1068.6
(1.9)
P 		1238.4
(3)
P 		1221.1
(2.9)
P 		1012.9
(1.6)
P 		792.8
(0.1)
P 		303
(-3)
P 		935
B 1393
(3)
P 		1250.3
(2.1)
P 		1062
(1)
P 		802.2
(-0.5)
P 		1222.1
(2)
P 		387.3
(-3)
P 		1006
C 1515.9
(3)
P 		1299.1
(1.8)
P 		1196.5
(1.3)
P 		721.5
(-1.3)
P 		1020.3
(0.3)
P 		395.6
(-3)
P 		1120
avr 1325.8
(3) 		1262.6
(2.6) 		1159.9
(2) 		845.5
(0) 		1011.7
(1) 		362
(-3) 		964
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 344.7
(3)
P 		263.7
(1.5)
P 		283.5
(1.9)
P 		19.3
(-3)
A 		325
B 266.4
(3)
P 		268.1
(3)
P 		251.9
(2.6)
P 		3.7
(-3)
A 		264
C 265.2
(0.5)
P 		366.3
(1.8)
P 		453.6
(3)
P 		9
(-3)
A 		445
avr 292.1
(2.3) 		299.4
(2.4) 		329.7
(3) 		10.7
(-3) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 197
(-1)
P 		440.4
(3)
P 		265.9
(0.1)
P 		256.9
(-0)
P 		239.2
(-0.3)
P 		73.8
(-3)
P 		367
B 484.7
(2.8)
P 		416.2
(1.6)
P 		257.9
(-1.1)
P 		212.5
(-1.8)
P 		496.5
(3)
P 		144.4
(-3)
P 		352
C 561.9
(3)
P 		396.4
(0.7)
P 		304.5
(-0.6)
P 		145.1
(-2.8)
P 		330.1
(-0.2)
P 		132.4
(-3)
P 		430
avr 414.5
(2.9) 		417.7
(3) 		276.1
(0.2) 		204.8
(-1.2) 		355.3
(1.8) 		116.9
(-3) 		301
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16283
Sequence Type Exemplar sequence
Representative Public ID T04F8.8 NCBI
Target Description T04F8.8 /REP_DB=WormBase Gene ID /WP=CE18927 /TR=Q22168 /GB=CAA91483.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077544 NCBI Caenorhabditis elegans T04F8.8 (T04F8.8) mRNA, complete cds. 11/11 None
SNAP00000020397 ENSEMBL cdna:SNAP chromosome:CEL140:X:11647404:11648003:1 11/11 None
GENEFINDER00000020408 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11647404:11648003:1 11/11 None
T04F8.8 ENSEMBL cdna:known chromosome:CEL140:X:11647377:11648101:1 gene:T04F8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11647403-11648003(+) 76.1 100.0
Public Domain and Genome References
Gene Title
Ensembl T04F8.8
Entrez Gene 181351 Entrez gene
SwissProt Q22168 EMBL-EBI
WormBase CE18927 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509945.1 1 5-27
T04F8.8 1 5-27
SNAP00000020397 1 5-27
GENEFINDER00000020408 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:179349_AT
atgcgaacaactgtacttttgagtttagctgcactcgtaggagttgcttattgtggcgga
tatggtgcccaagcttatggaatgggaggtggcggaggtggttataatcgtccaatgaat
tcatacggaaatggttataacaatggcggaggtttcaataattatggaaatggtggagga
tttggtggaaacaattacaacaatggtccaccaccattcgatggcggatacaatagaccg
tatggaggaggaggtggaggtggatatggaagaccacaaggatatgttcctccaccccca
ccaccaccaacacagccagaaccagaaccagagccacgtccagagccacaaccggagcca
caaccagaaccacaaccagagccacaaccagaaccacagccagagccgcaccctgaacca
gctccagagccaattgttaaaccatacaactcttacgctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGAACAACTGTACTTTTGAGTT 241 41 13 Antisense
GTTTAGCTGCACTCGTAGGAGTTGC 334 431 35 Antisense
GGAGTTGCTTATTGTGGCGGATATG 108 517 52 Antisense
GGCGGATATGGTGCCCAAGCTTATG 536 517 67 Antisense
TTATGGAATGGGAGGTGGCGGAGGT 276 661 87 Antisense
GGCGGAGGTGGTTATAATCGTCCAA 695 539 103 Antisense
ACAATTACAACAATGGTCCACCACC 297 115 203 Antisense
TCCACCACCATTCGATGGCGGATAC 567 589 219 Antisense
ACCACAAGGATATGTTCCTCCACCC 475 83 285 Antisense
TCCAGAGCCAATTGTTAAACCATAC 367 585 435 Antisense
TAAACCATACAACTCTTACGCTCAA 674 639 450 Antisense
Sequence Source Affymetrix Proprietary Database