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[179348_at]

Description C15C8.1 /REP_DB=WormBase Gene ID /WP=CE05285 /TR=Q18017 /GB=CAA99774.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 41      6grp_total > 26      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 912
1 2 3 4 range
A 1260.7
(3)
P 		654.9
(-1.2)
P 		389.1
(-3)
P 		813.6
(-0.1)
P 		872
B 1165.9
(3)
P 		476.3
(-2.1)
P 		348.8
(-3)
P 		926.9
(1.2)
P 		817
C 1143.4
(3)
P 		505.5
(-2)
P 		377.5
(-3)
P 		816.9
(0.4)
P 		766
avr 1190
(3) 		545.6
(-1.7) 		371.8
(-3) 		852.5
(0.5) 		818

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 790
1 2 3 4 5 6 range
A 1237.2
(3)
P 		795.7
(-0.8)
P 		626.2
(-2.2)
P 		532
(-3)
P 		547
(-2.9)
P 		561.5
(-2.7)
P 		705
B 950.5
(3)
P 		930.8
(2.8)
P 		753.7
(0.6)
P 		630.7
(-0.9)
P 		455.6
(-3)
P 		832.7
(1.6)
P 		495
C 912.6
(3)
P 		901.5
(2.9)
P 		721
(0.5)
P 		641.8
(-0.5)
P 		446.8
(-3)
P 		665.7
(-0.2)
P 		466
avr 1033.4
(3) 		876
(1.3) 		700.3
(-0.6) 		601.5
(-1.7) 		483.1
(-3) 		686.6
(-0.8) 		550
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 459
(3)
P 		142.2
(-2.3)
P 		101.7
(-3)
P 		119.1
(-2.7)
P 		357
B 371.8
(3)
P 		117.6
(-2.2)
P 		80.8
(-3)
P 		197.5
(-0.6)
P 		291
C 378.5
(3)
P 		145.3
(-2.7)
P 		131.6
(-3)
P 		137.7
(-2.9)
P 		247
avr 403.1
(3) 		135
(-2.4) 		104.7
(-3) 		151.4
(-2.1) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 228.1
(0.8)
P 		283
(3)
P 		136.4
(-2.9)
P 		134.9
(-3)
P 		165.1
(-1.8)
P 		136.7
(-2.9)
P 		148
B 330.7
(3)
P 		309.8
(2.2)
P 		183
(-2.4)
P 		167.1
(-3)
P 		185.1
(-2.3)
P 		310.5
(2.3)
P 		164
C 338.3
(3)
P 		275.1
(1.2)
P 		183.5
(-1.4)
P 		129.1
(-3)
P 		144.6
(-2.6)
P 		222.9
(-0.3)
P 		209
avr 299
(3) 		289.3
(2.6) 		167.6
(-2.1) 		143.7
(-3) 		164.9
(-2.2) 		223.4
(0.1) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14191
Sequence Type Exemplar sequence
Representative Public ID C15C8.1 NCBI
Target Description C15C8.1 /REP_DB=WormBase Gene ID /WP=CE05285 /TR=Q18017 /GB=CAA99774.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073782 NCBI Caenorhabditis elegans C15C8.1 (C15C8.1) mRNA, complete cds. 11/11 None
SNAP00000030240 ENSEMBL cdna:SNAP chromosome:CEL140:V:12736843:12738569:1 11/11 None
GENEFINDER00000030249 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12736843:12738569:1 11/11 None
C15C8.1 ENSEMBL cdna:known chromosome:CEL140:V:12736788:12738621:1 gene:C15C8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12736842-12738569(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C8.1
Entrez Gene 179742 Entrez gene
SwissProt Q18017 EMBL-EBI
WormBase CE05285 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99774 Hypothetical protein C15C8.1 [Caenorhabditis elegans] ref|NP_506183.1| C15C8.1 [Caenorhabditis elegans] 0.0
blast CAE63981 Hypothetical protein CBG08573 [Caenorhabditis briggsae] 1.0E-168
blast CAB04545 Hypothetical protein K02E2.1 [Caenorhabditis elegans] ref|NP_507922.1| K02E2.1 [Caenorhabditis elegans] 2.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506183.1 7 44-66,78-100,120-142,155-177,187-209,239-258,293-315
C15C8.1 7 44-66,78-100,120-142,155-177,187-209,239-258,293-315
SNAP00000030240 7 44-66,78-100,120-142,155-177,187-209,239-258,293-315
GENEFINDER00000030249 7 44-66,78-100,120-142,155-177,187-209,239-258,293-315
Sequence
Target Sequence 
>C. ELEGANS:179348_AT
cacgtagccgtcttggttttggagcagctgctgtaattgtaatgaatattcctcaatggt
ttgagttttatgtgaaaatcgccgaacttttcgcgccatacctttggaactcggacgatg
aaaaaactgtatactacactgcactggcaattcaacttctgacatttgacactgttcgtt
tgttcatgagcctgttcatgctagttgccttcttcctaaccgtttcatcaagatttgcca
ttgatcaatggattcgtcgtcaacatcacccaactggaaatccaaccgccacacagaaca
aggtcttcatcgcaacccaaaatcaaccattgctaatggataccggagagaaaaagagtc
caccaccaccaacacctccaaatcctccagttaatcatgctattgctccagtcgctcaac
atcctcaacccatgccaattccccaccaagtaccttcgccagctcatggtgcagctcatg
gtcatccacaagctccaccaatgtatcctggaatcggattcgctcctggtatgcttcaac
ttccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGTAGCCGTCTTGGTTTTGGAGC 12 59 716 Antisense
CGCCATACCTTTGGAACTCGGACGA 337 255 809 Antisense
CTGCACTGGCAATTCAACTTCTGAC 81 237 854 Antisense
ACTGTTCGTTTGTTCATGAGCCTGT 75 97 886 Antisense
TGAGCCTGTTCATGCTAGTTGCCTT 47 571 902 Antisense
AGAACAAGGTCTTCATCGCAACCCA 529 73 1010 Antisense
ACCTCCAAATCCTCCAGTTAATCAT 109 87 1089 Antisense
GTTAATCATGCTATTGCTCCAGTCG 643 445 1105 Antisense
GCAGCTCATGGTCATCCACAAGCTC 40 315 1186 Antisense
TCCTGGAATCGGATTCGCTCCTGGT 130 595 1221 Antisense
CTCCTGGTATGCTTCAACTTCCACA 245 235 1238 Antisense
Sequence Source Affymetrix Proprietary Database