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[179347_at]

Description C12D8.9 /REP_DB=WormBase Gene ID /WP=CE05272 /TR=Q17940 /GB=CAA98237.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 40
(-2.8)
A 		73.6
(-1.2)
A 		35.8
(-3)
A 		160.6
(3)
P 		125
B 39.8
(-3)
A 		56.3
(-1.6)
A 		44.9
(-2.6)
A 		111.6
(3)
P 		72
C 62.7
(-2.2)
P 		39.7
(-3)
A 		44.6
(-2.8)
A 		203.7
(3)
P 		164
avr 47.5
(-2.7) 		56.5
(-2.2) 		41.8
(-3) 		158.6
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 65.1
(-1.5)
P 		52.4
(-3)
P 		60.8
(-2)
P 		58.4
(-2.3)
A 		104.7
(3)
P 		90.4
(1.4)
P 		52
B 32.2
(-2.8)
P 		47.1
(-1.7)
M 		29.3
(-3)
A 		38.6
(-2.3)
A 		91.3
(1.5)
P 		111.1
(3)
P 		82
C 47.2
(-1.3)
P 		70.5
(-0.1)
P 		12.5
(-3)
A 		55.1
(-0.9)
A 		103.4
(1.5)
P 		134
(3)
P 		122
avr 48.2
(-1.9) 		56.7
(-1.3) 		34.2
(-3) 		50.7
(-1.7) 		99.8
(2.1) 		111.8
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 14.5
(-0.8)
A 		16
(-0.2)
A 		9.4
(-3)
A 		23.5
(3)
P 		14
B 12.7
(-2)
A 		13.9
(-1.4)
A 		10.4
(-3)
A 		23.8
(3)
P 		13
C 20.7
(-0.6)
P 		11.4
(-3)
A 		15.5
(-1.9)
A 		34.3
(3)
P 		23
avr 16
(-1.4) 		13.8
(-2.2) 		11.8
(-3) 		27.2
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 12
(-3)
P 		18.6
(-1)
P 		13.3
(-2.6)
P 		14.8
(-2.1)
A 		31.6
(3)
P 		22
(0.1)
P 		20
B 11.2
(-2.3)
P 		15.7
(-1.5)
M 		7.1
(-3)
A 		10.2
(-2.5)
A 		37.1
(2.2)
P 		41.4
(3)
P 		34
C 17.5
(-0.9)
P 		21.5
(-0.4)
P 		3.2
(-3)
A 		11.1
(-1.9)
A 		33.5
(1.4)
P 		44.8
(3)
P 		42
avr 13.6
(-1.8) 		18.6
(-0.7) 		7.9
(-3) 		12
(-2.1) 		34.1
(2.6) 		36.1
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11893
Sequence Type Exemplar sequence
Representative Public ID C12D8.9 NCBI
Target Description C12D8.9 /REP_DB=WormBase Gene ID /WP=CE05272 /TR=Q17940 /GB=CAA98237.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073235(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073235 NCBI Caenorhabditis elegans C12D8.9 (C12D8.9) mRNA, complete cds. 10/11 None
SNAP00000021007 ENSEMBL cdna:SNAP chromosome:CEL140:V:10245436:10245759:-1 10/11 None
GENEFINDER00000021020 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10245436:10245759:-1 10/11 None
C12D8.9 ENSEMBL cdna:known chromosome:CEL140:V:10245436:10245759:-1 gene:C12D8.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10245435-10245759(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D8.9
Entrez Gene 182543 Entrez gene
SwissProt Q17940 EMBL-EBI
WormBase CE34157 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98237 Hypothetical protein C12D8.9 [Caenorhabditis elegans] ref|NP_505636.2| C12D8.9 [Caenorhabditis elegans] 1.0E-45
blast CAE64773 Hypothetical protein CBG09564 [Caenorhabditis briggsae] 7.0E-28
Sequence
Target Sequence 
>C. ELEGANS:179347_AT
tgatttgaagactgccatcgaaaacaacgaaccaattcgaaaaggaatagaggaaaccat
gcacagagcttctcagattcgtatcaaacaggtatcaattttcattttgtttttcctgaa
tgaaatcaaaattcagagatacaactgcgctgagcaagaagttactcaaatgcgtgctcc
atttcttggattctcagtttttgttcgattccagtcaagagctcgtgcccatacaattaa
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTTGAAGACTGCCATCGAAAAC 658 561 36 Antisense
GACTGCCATCGAAAACAACGAACCA 419 375 45 Antisense
GGAAACCATGCACAGAGCTTCTCAG 615 527 87 Antisense
GAGCTTCTCAGATTCGTATCAAACA 177 389 101 Antisense
GTATCAAACAGGTATCAATTTTCAT 425 453 116 Antisense
GAGATACAACTGCGCTGAGCAAGAA 315 395 171 Antisense
AGAAGTTACTCAAATGCGTGCTCCA 31 75 192 Antisense
TCAAATGCGTGCTCCATTTCTTGGA 372 629 201 Antisense
GATTCTCAGTTTTTGTTCGATTCCA 23 433 224 Antisense
CGATTCCAGTCAAGAGCTCGTGCCC 115 249 241 Antisense
AGAGCTCGTGCCCATACAATTAAAA 260 69 253 Antisense
Sequence Source Affymetrix Proprietary Database