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[179346_at]

Description B0284.1 /REP_DB=WormBase Gene ID /WP=CE00650 /TR=Q17466 /GB=CAA83220.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      4grp_high_8_8 > 06      6grp_total > 66      4grp_total > 02      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 65.1
(-2.9)
P 		73.3
(-2.6)
A 		62.2
(-3)
A 		249.3
(3)
P 		187
B 70.2
(-3)
P 		71.1
(-3)
P 		85.4
(-2.3)
A 		200.7
(3)
P 		131
C 78.5
(-2.6)
A 		66
(-3)
M 		69.4
(-2.9)
P 		251.4
(3)
P 		185
avr 71.3
(-3) 		70.1
(-3) 		72.3
(-2.9) 		233.8
(3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 203.8
(2.5)
P 		65.7
(-3)
P 		216
(3)
P 		139.7
(-0.1)
P 		158
(0.7)
P 		216.8
(3)
P 		151
B 94.3
(-2.3)
P 		100.4
(-2.2)
P 		154.1
(-0.7)
P 		69
(-3)
P 		169.2
(-0.3)
P 		294.3
(3)
P 		225
C 61.6
(-3)
P 		164.9
(-1)
P 		145.2
(-1.4)
P 		130.4
(-1.7)
A 		112.7
(-2)
P 		376.7
(3)
P 		315
avr 119.9
(-2.7) 		110.3
(-3) 		171.8
(-1) 		113
(-2.9) 		146.6
(-1.8) 		295.9
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 23.7
(-0.7)
P 		15.9
(-3)
A 		16.3
(-2.9)
A 		36.5
(3)
P 		21
B 22.4
(-1.9)
P 		17.6
(-3)
P 		19.8
(-2.5)
A 		42.8
(3)
P 		25
C 26
(-1.2)
A 		19
(-3)
M 		24.2
(-1.7)
P 		42.4
(3)
P 		23
avr 24
(-1.3) 		17.5
(-3) 		20.1
(-2.3) 		40.6
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 37.6
(-0.1)
P 		23.4
(-3)
P 		47
(1.8)
P 		35.4
(-0.6)
P 		47.7
(2)
P 		52.8
(3)
P 		29
B 32.8
(-2)
P 		33.4
(-2)
P 		37.4
(-1.7)
P 		18.3
(-3)
P 		68.7
(0.3)
P 		109.7
(3)
P 		91
C 22.8
(-3)
P 		50.3
(-1.4)
P 		37
(-2.2)
P 		26.2
(-2.8)
A 		36.5
(-2.2)
P 		126.1
(3)
P 		103
avr 31.1
(-2.6) 		35.7
(-2.2) 		40.5
(-1.8) 		26.6
(-3) 		51
(-0.9) 		96.2
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179346_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8075
Sequence Type Exemplar sequence
Representative Public ID B0284.1 NCBI
Target Description B0284.1 /REP_DB=WormBase Gene ID /WP=CE00650 /TR=Q17466 /GB=CAA83220.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065481 NCBI Caenorhabditis elegans B0284.1 (B0284.1) mRNA, complete cds. 11/11 None
B0284.1 ENSEMBL cdna:known chromosome:CEL140:III:4376996:4379191:1 gene:B0284.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025287 2/11 Cross Hyb Matching Probes None
SNAP00000025280 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4376995-4379191(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0284.1
Entrez Gene 181902 Entrez gene
SwissProt Q17466 EMBL-EBI
WormBase CE00650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83220 Hypothetical protein B0284.1 [Caenorhabditis elegans] ref|NP_497882.1| B0284.1 [Caenorhabditis elegans] 0.0
blast CAA83223 Hypothetical protein B0284.2 [Caenorhabditis elegans] ref|NP_497884.1| B0284.2 [Caenorhabditis elegans] 1.0E-62
blast CAE62491 Hypothetical protein CBG06596 [Caenorhabditis briggsae] 3.0E-55
Sequence
Target Sequence 
>C. ELEGANS:179346_AT
aagcatcacctctggaacaggctatttttcgatttgagagttctttggaatttgatccaa
tcgaaaactccattgaattatatgatgagattcacagactgaatgcaagtttgtacaaaa
ctgtgaactcgcttccgttggtttctcgaattacgttaatccaacctacaccctacacct
tacaccgacttataaatttcttttctaaaaacaagtggtctgaaggtattgagaaggctg
tgtatacgtgtcaactcacaagcgcagtccggccactgcaccgcgcggtggcttttgtct
gctacctttcggtcctgaaccatccaccactccttatgcacccgggactgaccatcttcc
gacagtcatcccctggtgacgcagcgcttggcacggacgctcggtcgacgttgacaacga
catacacaggactcctcctctcactccatccacacttatctaccgtcaagaagctgactc
acaagcgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCATCACCTCTGGAACAGGCTAT 509 151 938 Antisense
CAAAACTGTGAACTCGCTTCCGTTG 377 189 1053 Antisense
GCTTCCGTTGGTTTCTCGAATTACG 443 303 1068 Antisense
CTACACCTTACACCGACTTATAAAT 599 209 1110 Antisense
GAAGGCTGTGTATACGTGTCAACTC 649 333 1170 Antisense
TACGTGTCAACTCACAAGCGCAGTC 561 647 1182 Antisense
GACTGACCATCTTCCGACAGTCATC 541 375 1283 Antisense
ACGCTCGGTCGACGTTGACAACGAC 78 91 1334 Antisense
GACAACGACATACACAGGACTCCTC 320 365 1350 Antisense
ATCCACACTTATCTACCGTCAAGAA 315 41 1385 Antisense
TCAAGAAGCTGACTCACAAGCGCCC 613 629 1403 Antisense
Sequence Source Affymetrix Proprietary Database