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[179345_at]

Description T09F5.8 /REP_DB=WormBase Gene ID /WP=CE13535 /TR=O18075 /GB=CAB05808.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 09      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 4.9
(-3)
A 		6.3
(-2.7)
A 		5.9
(-2.8)
A 		34.6
(3)
A 		30
B 2.4
(-3)
A 		5.4
(0.6)
A 		7.4
(3)
A 		4.9
(0)
A 		5
C 5.1
(3)
A 		3.4
(-0.9)
A 		2.5
(-3)
A 		4.6
(1.8)
A 		3
avr 4.1
(-3) 		5
(-2.5) 		5.3
(-2.3) 		14.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 5.4
(1.8)
A 		5.3
(1.6)
A 		3.2
(-2.6)
A 		6
(3)
A 		4.3
(-0.4)
A 		3
(-3)
A 		3
B 3.5
(-0.5)
A 		5.2
(3)
A 		2.3
(-3)
A 		2.8
(-2)
A 		3.3
(-0.9)
A 		4
(0.5)
A 		3
C 6.2
(3)
A 		2.8
(-3)
A 		2.8
(-3)
A 		3
(-2.6)
A 		2.9
(-2.8)
A 		3.8
(-1.2)
A 		3
avr 5
(3) 		4.4
(1.4) 		2.8
(-3) 		3.9
(0) 		3.5
(-1.1) 		3.6
(-0.8) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.8
(-2.4)
A 		1.4
(-3)
A 		1.5
(-2.8)
A 		5.1
(3)
A 		4
B 0.8
(-3)
A 		1.3
(0.3)
A 		1.7
(3)
A 		1
(-1.7)
A 		1
C 1.7
(3)
A 		1
(-1.7)
A 		0.9
(-2.3)
A 		0.8
(-3)
A 		1
avr 1.4
(-1.9) 		1.2
(-3) 		1.4
(-1.9) 		2.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1
(-1.5)
A 		1.9
(3)
A 		0.7
(-3)
A 		1.5
(1)
A 		1.3
(0)
A 		0.7
(-3)
A 		1
B 1.2
(0.3)
A 		1.7
(3)
A 		0.6
(-3)
A 		0.7
(-2.5)
A 		1.3
(0.8)
A 		1.5
(1.9)
A 		1
C 2.3
(3)
A 		0.9
(-1.9)
A 		0.7
(-2.6)
A 		0.6
(-3)
A 		0.9
(-1.9)
A 		1.3
(-0.5)
A 		2
avr 1.5
(3) 		1.5
(3) 		0.7
(-3) 		0.9
(-1.5) 		1.2
(0.8) 		1.2
(0.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179345_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12841
Sequence Type Exemplar sequence
Representative Public ID T09F5.8 NCBI
Target Description T09F5.8 /REP_DB=WormBase Gene ID /WP=CE13535 /TR=O18075 /GB=CAB05808.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074342 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-278) (srh-278) mRNA, complete cds. 11/11 None
GENEFINDER00000036453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15173048:15182404:1 11/11 None
T09F5.8 ENSEMBL cdna:known chromosome:CEL140:V:15173048:15174228:1 gene:T09F5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036442 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15173047-15174228(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-278
Ensembl T09F5.8
Entrez Gene 188347 Entrez gene
SwissProt O18075 EMBL-EBI
WormBase CE13535 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05808 Hypothetical protein T09F5.8 [Caenorhabditis elegans] ref|NP_506743.1| Serpentine Receptor, class H family member (srh-278) [Caenorhabditis elegans] 0.0
blast CAB05808 Hypothetical protein T09F5.8 [Caenorhabditis elegans] ref|NP_506743.1| Serpentine Receptor, class H family member (srh-278) [Caenorhabditis elegans] 1.0E-177
blast CAB07251 Hypothetical protein K05D4.6 [Caenorhabditis elegans] ref|NP_507079.1| Serpentine Receptor, class H family member (srh-277) [Caenorhabditis elegans] 1.0E-144
blast CAB07251 Hypothetical protein K05D4.6 [Caenorhabditis elegans] ref|NP_507079.1| Serpentine Receptor, class H family member (srh-277) [Caenorhabditis elegans] 1.0E-137
blast CAE74784 Hypothetical protein CBG22615 [Caenorhabditis briggsae] 4.0E-92
blast CAE74784 Hypothetical protein CBG22615 [Caenorhabditis briggsae] 8.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506743.1 7 10-32,61-83,93-112,132-154,198-220,241-260,275-297
T09F5.8 7 10-32,61-83,93-112,132-154,198-220,241-260,275-297
GENEFINDER00000036453 11 10-32,61-83,93-112,132-154,198-220,241-260,275-297,306-328,338-360,372-394,404-426
Sequence
Target Sequence 
>C. ELEGANS:179345_AT
atggacgtattgtcttctacatcatcaactattctcttgcacttttgtattttgtaccta
ccgtaattcaaattcctgatcaaaatctcgctcgccaggaaatcttcaaaatgtaccctc
aggtccgtcactttgacaccactgaacatgagatatatgttgtcgcgtatgatatgggca
tccgagaatacattgggtaccggcaggtgataagtttgggaaccgtgacagtggagggat
tagtgtttttaattctatcacattatcatatttacgtctccactaaaaatatgaaagtat
ccacaactatgaagatgcagaaaatcttcttgaaagctttatacatgcagatagcaatcc
ctgcaatcattatggtagttccacagattgttctgaatgtgctgggttacctttacatga
atagccccgaaatgaatagtctcgcgtatatgctcatgtcagttcacggagcatctgcaa
cacttatcatgctttactgtcatgctccatatcacgatttctgtgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACGTATTGTCTTCTACATCAT 129 53 398 Antisense
AACTATTCTCTTGCACTTTTGTATT 7 141 424 Antisense
AAATCTCGCTCGCCAGGAAATCTTC 17 119 480 Antisense
TCAAAATGTACCCTCAGGTCCGTCA 563 627 503 Antisense
CATTATCATATTTACGTCTCCACTA 456 215 658 Antisense
GATAGCAATCCCTGCAATCATTATG 677 423 747 Antisense
GTTACCTTTACATGAATAGCCCCGA 578 443 803 Antisense
ATAGTCTCGCGTATATGCTCATGTC 70 23 833 Antisense
AGTTCACGGAGCATCTGCAACACTT 649 63 858 Antisense
TGCTTTACTGTCATGCTCCATATCA 707 579 887 Antisense
GCTCCATATCACGATTTCTGTGCCA 275 299 901 Antisense
Sequence Source Affymetrix Proprietary Database