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[179344_at]

Description F38H4.3 /REP_DB=WormBase Gene ID /WP=CE10062 /TR=Q20178 /GB=CAB01171.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 80      6grp_total > 25      4grp_total > 21      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 284.7
(0.3)
P 		212.3
(-2.8)
P 		207.2
(-3)
P 		349.1
(3)
P 		142
B 273.3
(1.1)
P 		213.9
(-1.3)
P 		170.1
(-3)
P 		321.1
(3)
P 		151
C 297.9
(1.3)
P 		233.2
(-0.3)
P 		130.1
(-3)
P 		361.6
(3)
P 		232
avr 285.3
(1) 		219.8
(-1.3) 		169.1
(-3) 		343.9
(3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 247.2
(1.4)
P 		292.6
(3)
P 		172.1
(-1.3)
P 		123.7
(-3)
P 		152
(-2)
P 		206.6
(-0.1)
P 		169
B 320.4
(3)
P 		320.1
(3)
P 		185
(-1.6)
P 		217.3
(-0.5)
P 		144.3
(-3)
P 		179.9
(-1.8)
P 		176
C 215.8
(0)
P 		318.4
(3)
P 		187.7
(-0.8)
P 		146.1
(-2)
P 		110.7
(-3)
P 		147.3
(-1.9)
P 		208
avr 261.1
(1.3) 		310.4
(3) 		181.6
(-1.4) 		162.4
(-2.1) 		135.7
(-3) 		177.9
(-1.6) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 103.7
(3)
P 		46.1
(-3)
P 		54.2
(-2.2)
P 		51.1
(-2.5)
P 		58
B 87.2
(3)
P 		52.8
(-1.3)
P 		39.4
(-3)
P 		68.4
(0.6)
P 		48
C 98.6
(3)
P 		67
(-0.6)
P 		45.3
(-3)
P 		61
(-1.2)
P 		53
avr 96.5
(3) 		55.3
(-1.9) 		46.3
(-3) 		60.2
(-1.3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 45.6
(-1.8)
P 		104.1
(3)
P 		37.5
(-2.5)
P 		31.4
(-3)
P 		45.9
(-1.8)
P 		50.3
(-1.4)
P 		73
B 111.5
(3)
P 		106.6
(2.6)
P 		44.9
(-3)
P 		57.6
(-1.9)
P 		58.6
(-1.8)
P 		67.1
(-1)
P 		67
C 80
(1.5)
P 		97.1
(3)
P 		47.8
(-1.4)
P 		29.4
(-3)
P 		35.8
(-2.4)
P 		49.3
(-1.2)
P 		68
avr 79
(0.8) 		102.6
(3) 		43.4
(-2.6) 		39.5
(-3) 		46.8
(-2.3) 		55.6
(-1.5) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10054
Sequence Type Exemplar sequence
Representative Public ID F38H4.3 NCBI
Target Description F38H4.3 /REP_DB=WormBase Gene ID /WP=CE10062 /TR=Q20178 /GB=CAB01171.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069840(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069840 NCBI Caenorhabditis elegans F38H4.3 (F38H4.3) mRNA, complete cds. 11/11 None
SNAP00000007677 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11844417:11846212:1 11/11 None
GENEFINDER00000007690 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11844267:11846212:1 11/11 None
F38H4.3 ENSEMBL cdna:known chromosome:CEL140:IV:11844267:11846320:1 gene:F38H4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11844272-11846218(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38H4.3
Entrez Gene 185479 Entrez gene
SwissProt Q20178 EMBL-EBI
WormBase CE10062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01171 Hypothetical protein F38H4.3 [Caenorhabditis elegans] ref|NP_502241.1| F38H4.3 [Caenorhabditis elegans] 0.0
blast CAB01171 Hypothetical protein F38H4.3 [Caenorhabditis elegans] ref|NP_502241.1| F38H4.3 [Caenorhabditis elegans] 1.0E-161
blast CAE62131 Hypothetical protein CBG06175 [Caenorhabditis briggsae] 1.0E-120
blast CAE62131 Hypothetical protein CBG06175 [Caenorhabditis briggsae] 1.0E-106
Sequence
Target Sequence 
>C. ELEGANS:179344_AT
aacccctgacgccgaggagagaaggatcagagaatttagagagttgagctctgatgaaag
tttgaaaggaactaccgaagatgaagaagaggaaattattgttgatgaaatcccaccacc
acttccactatcaccacccccaaacctttacggacaagtcgccggctctccgatcccacc
acctcgttcccctagaagatccttgatgtacgcaaatgcagatgaatcagattcggattc
tgatgatgagggtagtggagatgctcatcttgttgcagtaaatgctcttgttcgaatgca
tccggttaattttgctccgcatagagaagatgacaggcaatctgtatcatcggtttcaac
cgcttctgatttgtctgaaaaagaaaatggaacagatattggtatcacacggatttctgt
caagagtgatggccgagcagagatccattccccaaagaggccagtgcgcgtgacgttgga
aaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCCCTGACGCCGAGGAGAGAAGG 693 145 897 Antisense
ATTGTTGATGAAATCCCACCACCAC 308 3 994 Antisense
TCGTTCCCCTAGAAGATCCTTGATG 282 599 1080 Antisense
GGAGATGCTCATCTTGTTGCAGTAA 213 519 1153 Antisense
TGCAGTAAATGCTCTTGTTCGAATG 516 577 1170 Antisense
GCATCCGGTTAATTTTGCTCCGCAT 120 311 1194 Antisense
GGCAATCTGTATCATCGGTTTCAAC 351 533 1232 Antisense
TTTCAACCGCTTCTGATTTGTCTGA 114 673 1250 Antisense
GGTATCACACGGATTTCTGTCAAGA 391 505 1297 Antisense
GATGGCCGAGCAGAGATCCATTCCC 454 405 1324 Antisense
GCCAGTGCGCGTGACGTTGGAAACA 357 281 1356 Antisense
Sequence Source Affymetrix Proprietary Database